Brara.J00339.1

Description : component *(uL6c) of large plastid ribosomal-subunit proteome

Gene families : OG_42_0002024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002024_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.J00339.1
Cluster	HCAA Clusters: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
A4A49_09051	No alias	50s ribosomal protein l6, chloroplastic	0.05	Orthogroups_2024-Update
Bradi1g62170	No alias	Ribosomal protein L6 family	0.07	Orthogroups_2024-Update
Cre09.g415950	No alias	Ribosomal protein L6 family	0.11	Orthogroups_2024-Update
Glyma.16G189100	No alias	Ribosomal protein L6 family	0.04	Orthogroups_2024-Update
HORVU4Hr1G040950.3	No alias	component *(uL6c) of large plastid ribosomal-subunit proteome	0.12	Orthogroups_2024-Update
Kfl00137_0220	kfl00137_0220_v1.1	(at1g05190 : 221.0) embryo defective 2394 (emb2394);...	0.05	Orthogroups_2024-Update
Potri.014G153000	No alias	Ribosomal protein L6 family	0.05	Orthogroups_2024-Update
Pp1s138_83V6	No alias	50s ribosomal protein l6	0.05	Orthogroups_2024-Update
Pp1s431_3V6	No alias	50s ribosomal protein l6	0.04	Orthogroups_2024-Update
Seita.9G400600.1	No alias	component *(uL6c) of large plastid ribosomal-subunit proteome	0.11	Orthogroups_2024-Update
Sobic.001G368500.1	No alias	component *(uL6c) of large plastid ribosomal-subunit proteome	0.06	Orthogroups_2024-Update
Solyc12g100160	No alias	Ribosomal protein L6 family (AHRD V3.3 *** AT1G05190.1)	0.06	Orthogroups_2024-Update
Sopen12g034790	No alias	Ribosomal protein L6	0.09	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	16Dec
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004655	porphobilinogen synthase activity	IEP	Predicted GO
MF	GO:0004749	ribose phosphate diphosphokinase activity	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008176	tRNA (guanine-N7-)-methyltransferase activity	IEP	Predicted GO
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016778	diphosphotransferase activity	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Predicted GO
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	133	207
IPR020040	Ribosomal_L6_a/b-dom	53	125

External Links

No external refs found!

Brara.J00339.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation