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  5. Brara.J00462.1

Brara.J00462.1


Description : Unknown function


Gene families : OG_42_0005685 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005685_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00462.1
Cluster HCAA Clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
At1g06720 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
Bradi1g63330 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 Orthogroups_2024-Update
Cre10.g445600 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
GRMZM2G399320 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Glyma.12G049700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Orthogroups_2024-Update
HORVU4Hr1G050710.6 No alias Unknown function 0.05 Orthogroups_2024-Update
Kfl00005_0380 kfl00005_0380_v1.... (at1g06720 : 506.0) P-loop containing nucleoside... 0.03 Orthogroups_2024-Update
Mp2g20920.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Pp1s158_107V6 No alias F4H5.19; expressed protein [Arabidopsis thaliana] 0.04 Orthogroups_2024-Update
Seita.9G414500.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.001G382500.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Solyc01g097640 No alias Ribosome biogenesis protein BMS1 (AHRD V3.3 *** A0A0B2PF71_GLYSO) 0.04 Orthogroups_2024-Update
Sopen00g003550 No alias Protein of unknown function (DUF663) 0.06 Orthogroups_2024-Update
evm.model.contig_2492.2 No alias (at1g06720 : 287.0) P-loop containing nucleoside... 0.03 Orthogroups_2024-Update
evm.model.tig00000478.23 No alias (at1g06720 : 305.0) P-loop containing nucleoside... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA 16Dec
BP GO:0042254 ribosome biogenesis IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004146 dihydrofolate reductase activity IEP Predicted GO
MF GO:0004659 prenyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006760 folic acid-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Predicted GO
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046653 tetrahydrofolate metabolic process IEP Predicted GO
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012948 AARP2CN 232 317
IPR007034 BMS1_TSR1_C 683 999
No external refs found!