1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.J00489.1

Brara.J00489.1


Description : plant-specific ALOG-type transcription factor


Gene families : OG_42_0000294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00489.1
Cluster HCAA Clusters: Cluster_329

Target Alias Description ECC score Gene Family Method Actions
At1g07090 No alias LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41] 0.03 Orthogroups_2024-Update
Bradi3g28800 No alias Protein of unknown function (DUF640) 0.02 Orthogroups_2024-Update
Brara.E00304.1 No alias plant-specific ALOG-type transcription factor 0.05 Orthogroups_2024-Update
Brara.E03441.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G00513.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G03612.1 No alias plant-specific ALOG-type transcription factor 0.05 Orthogroups_2024-Update
Glyma.19G248300 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
LOC_Os05g28040 No alias DUF640 domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Seita.3G208400.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.010G225100.1 No alias plant-specific ALOG-type transcription factor 0.02 Orthogroups_2024-Update
Sopen10g003120 No alias Protein of unknown function (DUF640) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006936 ALOG_dom 26 145
No external refs found!