Brara.J00748.1

Description : MADS/AGL-type transcription factor

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.J00748.1
Cluster	HCAA Clusters: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
At1g01530	No alias	AGL28 [Source:UniProtKB/TrEMBL;Acc:A0A178WE04]	0.03	Orthogroups_2024-Update
Bradi1g59250	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Bradi2g30530	No alias	AGAMOUS-like 23	0.03	Orthogroups_2024-Update
Bradi4g39420	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Brara.D01347.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.D02091.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
Brara.D02757.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.E00310.1	No alias	MADS/AGL-type transcription factor	0.05	Orthogroups_2024-Update
Glyma.03G019300	No alias	AGAMOUS-like 20	0.03	Orthogroups_2024-Update
Glyma.17G132700	No alias	AGAMOUS-like 19	0.03	Orthogroups_2024-Update
HORVU0Hr1G003020.3	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.03	Orthogroups_2024-Update
LOC_Os04g38770	No alias	OsMADS61 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
Pp1s118_161V6	No alias	mikc* mads-box transcription factor	0.02	Orthogroups_2024-Update
Seita.3G073000.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
Seita.6G156800.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Solyc01g087990	No alias	MADS-box transcription factor AGAMOUS-like protein (AHRD...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Predicted GO
MF	GO:0004602	glutathione peroxidase activity	IEP	Predicted GO
MF	GO:0005516	calmodulin binding	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006950	response to stress	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
MF	GO:0016843	amine-lyase activity	IEP	Predicted GO
MF	GO:0016844	strictosidine synthase activity	IEP	Predicted GO
MF	GO:0017025	TBP-class protein binding	IEP	Predicted GO
CC	GO:0030126	COPI vesicle coat	IEP	Predicted GO
CC	GO:0031012	extracellular matrix	IEP	Predicted GO
CC	GO:0044421	extracellular region part	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	89	172

External Links

No external refs found!

Brara.J00748.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation