Brara.J00749.1

Description : MADS/AGL-type transcription factor

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.J00749.1
Cluster	HCAA Clusters: Cluster_400

Target	Alias	Description	ECC score	Gene Family Method
A4A49_14235	No alias	developmental protein sepallata 1	0.04	Orthogroups_2024-Update
A4A49_18989	No alias	agamous-like mads-box protein agl19	0.04	Orthogroups_2024-Update
A4A49_19521	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_22632	No alias	floral homeotic protein agamous	0.04	Orthogroups_2024-Update
At1g22130	No alias	Agamous-like MADS-box protein AGL104...	0.03	Orthogroups_2024-Update
At1g24260	No alias	At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]	0.04	Orthogroups_2024-Update
At1g77980	No alias	Agamous-like MADS-box protein AGL66...	0.03	Orthogroups_2024-Update
At2g24840	No alias	Agamous-like MADS-box protein AGL61...	0.03	Orthogroups_2024-Update
At2g45650	No alias	AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]	0.04	Orthogroups_2024-Update
At4g22950	No alias	Agamous-like MADS-box protein AGL19...	0.03	Orthogroups_2024-Update
At5g23260	No alias	K-box region and MADS-box transcription factor family...	0.05	Orthogroups_2024-Update
At5g51860	No alias	MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]	0.02	Orthogroups_2024-Update
At5g60440	No alias	Agamous-like MADS-box protein AGL62...	0.04	Orthogroups_2024-Update
At5g60910	No alias	Agamous-like MADS-box protein AGL8...	0.04	Orthogroups_2024-Update
Bradi3g32090	No alias	AGAMOUS-like 20	0.02	Orthogroups_2024-Update
Brara.B01837.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.03	Orthogroups_2024-Update
Brara.B03164.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
Brara.C00582.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
Brara.C00694.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
Brara.D01509.1	No alias	MADS/AGL-type transcription factor	0.05	Orthogroups_2024-Update
Brara.E00310.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
Brara.G02489.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.04	Orthogroups_2024-Update
Brara.J01588.1	No alias	component *(PISTILLATA) of AP3-PISTILLATA organ-identity...	0.03	Orthogroups_2024-Update
Brara.K00198.1	No alias	MADS/AGL-type transcription factor	0.05	Orthogroups_2024-Update
GRMZM2G133568	No alias	AGAMOUS-like 16	0.02	Orthogroups_2024-Update
GRMZM2G171365	No alias	AGAMOUS-like 20	0.03	Orthogroups_2024-Update
Glyma.05G163200	No alias	K-box region and MADS-box transcription factor family protein	0.01	Orthogroups_2024-Update
Glyma.07G081300	No alias	AGAMOUS-like 6	0.03	Orthogroups_2024-Update
Glyma.08G282500	No alias	AGAMOUS-like 29	0.03	Orthogroups_2024-Update
Glyma.08G310100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.09G266400	No alias	AGAMOUS-like 6	0.03	Orthogroups_2024-Update
Glyma.09G283800	No alias	K-box region and MADS-box transcription factor family protein	0.04	Orthogroups_2024-Update
Glyma.13G034100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.20G136600	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Glyma.20G136700	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
HORVU3Hr1G026650.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
HORVU3Hr1G095240.6	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
HORVU6Hr1G002330.8	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os01g69850	No alias	OsMADS65 - MADS-box family gene with MIKC* type-box, expressed	0.02	Orthogroups_2024-Update
LOC_Os02g06860	No alias	OsMADS80 - MADS-box family gene with M-alpha type-box, expressed	0.02	Orthogroups_2024-Update
LOC_Os03g54160	No alias	OsMADS14 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
LOC_Os05g11414	No alias	OsMADS58 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
LOC_Os08g41950	No alias	OsMADS7 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g39130	No alias	OsMADS56 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
PSME_00031520-RA	No alias	(at1g26310 : 113.0) Floral homeotic gene encoding a MADS...	0.02	Orthogroups_2024-Update
Potri.001G058400	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.001G284301	No alias	AGAMOUS-like 21	0.02	Orthogroups_2024-Update
Potri.001G328600	No alias	AGAMOUS-like 8	0.03	Orthogroups_2024-Update
Potri.003G170200	No alias	AGAMOUS-like 8	0.03	Orthogroups_2024-Update
Potri.004G002400	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Potri.005G182200	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Pp1s267_56V6	No alias	agamous-like protein	0.02	Orthogroups_2024-Update
Seita.3G280400.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Seita.6G194800.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Seita.6G223400.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
Solyc03g114830	No alias	FRUITFULL-like MADS-box 2	0.02	Orthogroups_2024-Update
Solyc06g059970	No alias	TPI	0.02	Orthogroups_2024-Update
Sopen08g021160	No alias	SRF-type transcription factor (DNA-binding and...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	IEP	Predicted GO
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predicted GO
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predicted GO
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	88	170
IPR002100	TF_MADSbox	10	56

External Links

No external refs found!

Brara.J00749.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation