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  5. Brara.J01006.1

Brara.J01006.1


Description : pectin methylesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J01006.1
Cluster HCAA Clusters: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Glyma.01G066000 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G066100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G032220.4 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
PSME_00045263-RA No alias (at5g19730 : 435.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.006G137100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 216 403
IPR000070 Pectinesterase_cat 83 186
No external refs found!