1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.J01029.1

Brara.J01029.1


Description : rRNA methyltransferase *(NOP2)


Gene families : OG_42_0005147 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005147_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J01029.1
Cluster HCAA Clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Bradi3g56470 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.05 Orthogroups_2024-Update
Cre06.g273413 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.05 Orthogroups_2024-Update
Glyma.08G332000 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.05 Orthogroups_2024-Update
HORVU6Hr1G072030.1 No alias rRNA methyltransferase *(NOP2) 0.1 Orthogroups_2024-Update
Mp6g04100.1 No alias OLI2 LSU processome maturation factor 0.02 Orthogroups_2024-Update
Potri.001G369600 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.03 Orthogroups_2024-Update
Pp1s230_76V6 No alias nucleolar protein 120kda 0.05 Orthogroups_2024-Update
Seita.1G301700.1 No alias rRNA methyltransferase *(NOP2) 0.04 Orthogroups_2024-Update
Sobic.004G256000.1 No alias rRNA methyltransferase *(NOP2) 0.07 Orthogroups_2024-Update
Solyc07g052110 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.04 Orthogroups_2024-Update
Sopen02g024220 No alias NOL1/NOP2/sun family 0.05 Orthogroups_2024-Update
evm.model.contig_2251.1 No alias (at5g55920 : 395.0) Encodes a homolog of the S.... 0.03 Orthogroups_2024-Update
evm.model.tig00000114.21 No alias (at4g26600 : 466.0) S-adenosyl-L-methionine-dependent... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR031341 Methyltr_RsmF_N 260 337
IPR001678 MeTrfase_RsmB/NOP2 341 551
No external refs found!