1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.J01188.1

Brara.J01188.1


Description : aldehyde-generating component *(CER3) of CER1-CER3 alkane-forming complex


Gene families : OG_42_0000480 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000480_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J01188.1
Cluster HCAA Clusters: Cluster_388

Target Alias Description ECC score Gene Family Method Actions
Bradi4g30750 No alias Fatty acid hydroxylase superfamily 0.02 Orthogroups_2024-Update
PSME_00012546-RA No alias (at1g02205 : 552.0) Expression of the CER1 gene... 0.02 Orthogroups_2024-Update
PSME_00036343-RA No alias (at5g57800 : 478.0) encodes a transmembrane protein with... 0.03 Orthogroups_2024-Update
Potri.006G177500 No alias Fatty acid hydroxylase superfamily 0.03 Orthogroups_2024-Update
Seita.1G064400.1 No alias aldehyde-generating component *(CER3) of CER1-CER3... 0.03 Orthogroups_2024-Update
Sobic.010G212600.1 No alias aldehyde-generating component *(CER3) of CER1-CER3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEA 16Dec
BP GO:0008610 lipid biosynthetic process IEA 16Dec
MF GO:0016491 oxidoreductase activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR021940 Uncharacterised_Wax2_C 454 623
IPR006694 Fatty_acid_hydroxylase 131 272
No external refs found!