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  5. Brara.J01291.1

Brara.J01291.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J01291.1
Cluster HCAA Clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
105197 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
52147 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Bradi2g37360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g42710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi2g45110 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g05000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g42160 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G123014 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G230100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G072100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G141800 No alias mitochondrial RNAediting factor 1 0.02 Orthogroups_2024-Update
Glyma.19G202500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
MA_25584g0010 No alias (at4g18750 : 529.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_442926g0010 No alias (at4g13650 : 697.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_9258g0010 No alias (at4g13650 : 664.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00002078-RA No alias (at3g12770 : 644.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00002609-RA No alias (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00004138-RA No alias (at1g11290 : 633.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00004346-RA No alias (at4g18750 : 679.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00005432-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00007652-RA No alias (at1g11290 : 614.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00011140-RA No alias (at1g11290 : 575.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00016248-RA No alias (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00017531-RA No alias (at1g11290 : 661.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00017551-RA No alias (at4g18750 : 421.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00023451-RA No alias (at1g11290 : 535.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00024530-RA No alias (at4g18750 : 707.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00025196-RA No alias (at3g03580 : 681.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00031955-RA No alias (at1g11290 : 710.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00032959-RA No alias (at3g46790 : 529.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00035769-RA No alias (at4g13650 : 702.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00036495-RA No alias (at1g11290 : 559.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00036639-RA No alias (at1g11290 : 691.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00039458-RA No alias (at4g13650 : 677.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00046650-RA No alias (at4g21300 : 573.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00048581-RA No alias (at4g02750 : 590.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056594-RA No alias (at3g53360 : 383.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056663-RA No alias (at3g13770 : 545.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00057187-RA No alias (at1g11290 : 659.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.003G058700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.018G040100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s26_175V6 No alias T28P6.20; pentatricopeptide (PPR) repeat-containing... 0.04 Orthogroups_2024-Update
Seita.1G076000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G400300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G137300.1 No alias RNA editing factor *(ECB2/VAC1) 0.04 Orthogroups_2024-Update
Seita.5G360300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.5G385400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G460300.1 No alias RNA editing factor *(OTP72) 0.02 Orthogroups_2024-Update
Seita.7G165500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G075300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G339400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G341000.1 No alias RNA editing factor *(MEF25) 0.04 Orthogroups_2024-Update
Sobic.004G282000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc01g091610 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Solyc01g097670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g098150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc02g065030 No alias No description available 0.03 Orthogroups_2024-Update
Solyc02g088650 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g116840 No alias BED zinc finger,hAT family dimerization domain (AHRD... 0.03 Orthogroups_2024-Update
Sopen02g024180 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g024500 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen05g018650 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g006690 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g024970 No alias PPR repeat family 0.03 Orthogroups_2024-Update
evm.model.contig_2025.47 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00001038.5 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 217 264
IPR002885 Pentatricopeptide_repeat 318 366
IPR002885 Pentatricopeptide_repeat 163 186
IPR002885 Pentatricopeptide_repeat 393 418
IPR002885 Pentatricopeptide_repeat 192 216
IPR002885 Pentatricopeptide_repeat 93 119
No external refs found!