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  5. Brara.J01350.1

Brara.J01350.1


Description : C2H2-type subclass ZAT transcription factor


Gene families : OG_42_0000046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J01350.1
Cluster HCAA Clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
At1g27730 No alias Zinc finger protein ZAT10... 0.04 Orthogroups_2024-Update
At2g28710 No alias At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97] 0.03 Orthogroups_2024-Update
At2g37430 No alias ZAT11 [Source:UniProtKB/TrEMBL;Acc:A0A178VNJ8] 0.04 Orthogroups_2024-Update
At5g04390 No alias C2H2-type zinc finger family protein... 0.04 Orthogroups_2024-Update
At5g56200 No alias C2H2 type zinc finger transcription factor family... 0.04 Orthogroups_2024-Update
At5g59820 No alias Zinc finger protein ZAT12... 0.03 Orthogroups_2024-Update
Bradi1g66330 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
Brara.B01066.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
Brara.C00112.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.C03744.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.E00765.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.F02478.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G035103 No alias salt tolerance zinc finger 0.04 Orthogroups_2024-Update
GRMZM2G112251 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G113860 No alias zinc-finger protein 2 0.05 Orthogroups_2024-Update
GRMZM2G361210 No alias C2H2-type zinc finger family protein 0.04 Orthogroups_2024-Update
Glyma.06G045400 No alias salt tolerance zinc finger 0.04 Orthogroups_2024-Update
Glyma.18G287200 No alias C2H2 and C2HC zinc fingers superfamily protein 0.06 Orthogroups_2024-Update
HORVU3Hr1G086790.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G112930.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
LOC_Os02g19180 No alias ZOS2-06 - C2H2 zinc finger protein, expressed 0.03 Orthogroups_2024-Update
MA_70076g0010 No alias (at1g02040 : 115.0) C2H2-type zinc finger family... 0.03 Orthogroups_2024-Update
MA_85675g0010 No alias (at1g02040 : 116.0) C2H2-type zinc finger family... 0.03 Orthogroups_2024-Update
MA_9316262g0010 No alias (at2g45120 : 86.3) C2H2-like zinc finger protein;... 0.03 Orthogroups_2024-Update
PSME_00015139-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00025742-RA No alias (at3g60580 : 101.0) C2H2-like zinc finger protein;... 0.04 Orthogroups_2024-Update
PSME_00025745-RA No alias (at2g45120 : 107.0) C2H2-like zinc finger protein;... 0.02 Orthogroups_2024-Update
Potri.002G119300 No alias salt tolerance zinc finger 0.03 Orthogroups_2024-Update
Potri.010G229400 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
Potri.014G017300 No alias salt tolerance zinc finger 0.05 Orthogroups_2024-Update
Seita.9G357400.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Seita.9G361000.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G035000.1 No alias C2H2-type subclass ZAT transcription factor 0.05 Orthogroups_2024-Update
Sobic.001G079500.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
Sobic.001G330100.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
Sobic.001G330200.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Sobic.005G226100.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Solyc06g074800 No alias LOW QUALITY:Zinc finger family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc11g073060 No alias Zinc finger family protein (AHRD V3.3 *** B9HM54_POPTR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!