Brara.J01354.1

Description : component *(uS8) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001161 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001161_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.J01354.1
Cluster	HCAA Clusters: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
228163	No alias	Ribosomal protein S8 family protein	0.04	Orthogroups_2024-Update
At5g59850	No alias	AT1G07770 protein [Source:UniProtKB/TrEMBL;Acc:B9DI04]	0.08	Orthogroups_2024-Update
Bradi2g23110	No alias	ribosomal protein S15A	0.1	Orthogroups_2024-Update
Bradi2g54450	No alias	ribosomal protein S15A	0.1	Orthogroups_2024-Update
Brara.F00468.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Cre05.g234637	No alias	Ribosomal protein S8 family protein	0.07	Orthogroups_2024-Update
GRMZM2G083497	No alias	ribosomal protein S15A	0.09	Orthogroups_2024-Update
Glyma.01G240000	No alias	ribosomal protein S15A	0.04	Orthogroups_2024-Update
Glyma.07G255500	No alias	ribosomal protein S15A	0.05	Orthogroups_2024-Update
Glyma.11G003600	No alias	ribosomal protein S15A	0.03	Orthogroups_2024-Update
Glyma.11G003700	No alias	ribosomal protein S15A	0.03	Orthogroups_2024-Update
Glyma.15G102550	No alias	ribosomal protein S15A	0.05	Orthogroups_2024-Update
Glyma.17G018600	No alias	ribosomal protein S15A	0.08	Orthogroups_2024-Update
HORVU1Hr1G072060.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
HORVU3Hr1G086930.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Kfl00864_0040	kfl00864_0040_v1.1	(at5g59850 : 230.0) Ribosomal protein S8 family protein;...	0.04	Orthogroups_2024-Update
LOC_Os07g10720	No alias	40S ribosomal protein S15a, putative, expressed	0.03	Orthogroups_2024-Update
MA_10427318g0020	No alias	(at3g46040 : 214.0) Regulated by TCP20.; ribosomal...	0.02	Orthogroups_2024-Update
MA_57835g0010	No alias	(at3g46040 : 223.0) Regulated by TCP20.; ribosomal...	0.03	Orthogroups_2024-Update
Mp8g06510.1	No alias	component RPS15a of SSU proteome	0.03	Orthogroups_2024-Update
PSME_00001830-RA	No alias	(at5g59850 : 244.0) Ribosomal protein S8 family protein;...	0.03	Orthogroups_2024-Update
PSME_00015526-RA	No alias	(at5g59850 : 244.0) Ribosomal protein S8 family protein;...	0.04	Orthogroups_2024-Update
PSME_00039858-RA	No alias	(at5g59850 : 234.0) Ribosomal protein S8 family protein;...	0.01	Orthogroups_2024-Update
Potri.001G118100	No alias	ribosomal protein S15A	0.05	Orthogroups_2024-Update
Pp1s115_101V6	No alias	40s ribosomal protein s15a	0.04	Orthogroups_2024-Update
Pp1s1_304V6	No alias	40s ribosomal protein s15a	0.03	Orthogroups_2024-Update
Pp1s426_18V6	No alias	40s ribosomal protein s15a	0.07	Orthogroups_2024-Update
Pp1s45_88V6	No alias	40s ribosomal protein s15a	0.08	Orthogroups_2024-Update
Pp1s61_209V6	No alias	40s ribosomal protein s15a	0.03	Orthogroups_2024-Update
Seita.2G319400.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Seita.4G092300.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Seita.5G374600.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.02	Orthogroups_2024-Update
Sobic.003G012700.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Sobic.007G212600.1	No alias	component *(uS8) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Sopen04g025860	No alias	Ribosomal protein S8	0.06	Orthogroups_2024-Update
Sopen04g026010	No alias	Ribosomal protein S8	0.03	Orthogroups_2024-Update
Sopen04g026020	No alias	Ribosomal protein S8	0.09	Orthogroups_2024-Update
evm.model.contig_2045.5	No alias	(at5g59850 : 190.0) Ribosomal protein S8 family protein;...	0.09	Orthogroups_2024-Update
evm.model.tig00000158.110	No alias	(q9at34\|rs15a_dauca : 210.0) 40S ribosomal protein S15a...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Predicted GO
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003909	DNA ligase activity	IEP	Predicted GO
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Predicted GO
MF	GO:0003937	IMP cyclohydrolase activity	IEP	Predicted GO
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	Predicted GO
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	Predicted GO
CC	GO:0005680	anaphase-promoting complex	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006163	purine nucleotide metabolic process	IEP	Predicted GO
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Predicted GO
BP	GO:0006188	IMP biosynthetic process	IEP	Predicted GO
BP	GO:0006310	DNA recombination	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016597	amino acid binding	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Predicted GO
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0016842	amidine-lyase activity	IEP	Predicted GO
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Predicted GO
MF	GO:0019238	cyclohydrolase activity	IEP	Predicted GO
MF	GO:0019899	enzyme binding	IEP	Predicted GO
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0031406	carboxylic acid binding	IEP	Predicted GO
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
BP	GO:0042255	ribosome assembly	IEP	Predicted GO
BP	GO:0042256	mature ribosome assembly	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
MF	GO:0043177	organic acid binding	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
BP	GO:0046040	IMP metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0051020	GTPase binding	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
BP	GO:0070925	organelle assembly	IEP	Predicted GO
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predicted GO
BP	GO:0072521	purine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000630	Ribosomal_S8	7	130

External Links

No external refs found!

Brara.J01354.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation