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  5. Brara.J01381.1

Brara.J01381.1


Description : plant-specific E3 ubiquitin ligase *(RSL/RFA)


Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J01381.1
Cluster HCAA Clusters: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
Cre05.g240533 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
PSME_00027724-RA No alias (at5g60250 : 241.0) zinc finger (C3HC4-type RING finger)... 0.03 Orthogroups_2024-Update
Seita.3G152200.1 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 179 230
IPR002867 IBR_dom 139 162
No external refs found!