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  5. Brara.J01515.1

Brara.J01515.1


Description : siRNA-integrating factor *(AGO)


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J01515.1
Cluster HCAA Clusters: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
A4A49_04981 No alias protein argonaute pnh1 0.02 Orthogroups_2024-Update
At2g27880 No alias Protein argonaute 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJK3] 0.03 Orthogroups_2024-Update
Brara.B00933.1 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
Brara.J01517.1 No alias siRNA-integrating factor *(AGO) 0.03 Orthogroups_2024-Update
Brara.J01530.1 No alias siRNA-integrating factor *(AGO) 0.03 Orthogroups_2024-Update
GRMZM2G450474 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Orthogroups_2024-Update
Glyma.01G053100 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Glyma.17G119400 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Orthogroups_2024-Update
Kfl00001_0480 kfl00001_0480_v1.... (at1g48410 : 697.0) Encodes an RNA Slicer that... 0.02 Orthogroups_2024-Update
LOC_Os02g40320 No alias PINHEAD, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g45070 No alias PINHEAD, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00006858-RA No alias (at2g27040 : 822.0) AGO4 is a member of a class of... 0.03 Orthogroups_2024-Update
Potri.006G118600 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Potri.014G159400 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Sobic.001G053700.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G136150.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G180800.2 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032474 Argonaute_N 50 207
IPR003165 Piwi 559 743
IPR003165 Piwi 751 792
IPR032472 ArgoL2 411 456
IPR003100 PAZ_dom 273 401
IPR014811 ArgoL1 219 267
No external refs found!