1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.J01530.1

Brara.J01530.1


Description : siRNA-integrating factor *(AGO)


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J01530.1
Cluster HCAA Clusters: Cluster_354

Target Alias Description ECC score Gene Family Method Actions
Brara.J01515.1 No alias siRNA-integrating factor *(AGO) 0.03 Orthogroups_2024-Update
HORVU4Hr1G004010.8 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os03g47830 No alias argonaute, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g39640 No alias PINHEAD, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g28850 No alias retrotransposon protein, putative, unclassified, expressed 0.04 Orthogroups_2024-Update
Seita.7G201100.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 Orthogroups_2024-Update
Solyc06g073530 No alias Argonaute4c 0.03 Orthogroups_2024-Update
Sopen03g028990 No alias Piwi domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005384 manganese ion transmembrane transporter activity IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006875 cellular metal ion homeostasis IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
BP GO:0030026 cellular manganese ion homeostasis IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0046916 cellular transition metal ion homeostasis IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0048878 chemical homeostasis IEP Predicted GO
BP GO:0050801 ion homeostasis IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0055065 metal ion homeostasis IEP Predicted GO
BP GO:0055071 manganese ion homeostasis IEP Predicted GO
BP GO:0055076 transition metal ion homeostasis IEP Predicted GO
BP GO:0055080 cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0098771 inorganic ion homeostasis IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032474 Argonaute_N 21 175
IPR032472 ArgoL2 379 424
IPR003100 PAZ_dom 241 369
IPR014811 ArgoL1 187 233
IPR003165 Piwi 528 834
No external refs found!