Brara.J01552.1

Description : auxiliary co-chaperone involved in RuBisCo assembly *(CPN20) & Hsp60-co-chaperone *(Hsp20)

Gene families : OG_42_0002026 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002026_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.J01552.1
Cluster	HCAA Clusters: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g46596	No alias	chaperonin 20	0.02	Orthogroups_2024-Update
Bradi3g60027	No alias	chaperonin 20	0.07	Orthogroups_2024-Update
Cre08.g358562	No alias	chaperonin 20	0.08	Orthogroups_2024-Update
Cre12.g505850	No alias	chaperonin 20	0.07	Orthogroups_2024-Update
GRMZM2G399284	No alias	chaperonin 20	0.03	Orthogroups_2024-Update
Glyma.13G112500	No alias	chaperonin 20	0.05	Orthogroups_2024-Update
HORVU5Hr1G062310.1	No alias	auxiliary co-chaperone involved in RuBisCo assembly...	0.03	Orthogroups_2024-Update
HORVU6Hr1G082060.3	No alias	auxiliary co-chaperone involved in RuBisCo assembly...	0.04	Orthogroups_2024-Update
HORVU7Hr1G033900.2	No alias	auxiliary co-chaperone involved in RuBisCo assembly...	0.07	Orthogroups_2024-Update
Kfl00475_0020	kfl00475_0020_v1.1	(at5g20720 : 271.0) Encodes a chloroplast co-chaperonin...	0.05	Orthogroups_2024-Update
Mp1g10690.1	No alias	CPN20 auxiliary co-chaperone involved in RuBisCo...	0.02	Orthogroups_2024-Update
Potri.018G063200	No alias	chaperonin 20	0.03	Orthogroups_2024-Update
Seita.1G341200.1	No alias	Hsp60-co-chaperone *(Hsp20) & auxiliary co-chaperone...	0.04	Orthogroups_2024-Update
Seita.4G040000.1	No alias	Hsp60-co-chaperone *(Hsp20) & auxiliary co-chaperone...	0.04	Orthogroups_2024-Update
Solyc07g042250	No alias	chaperonin 21 precursor	0.03	Orthogroups_2024-Update
Solyc12g009250	No alias	Chaperonin (AHRD V3.3 *** Q69QD5_ORYSJ)	0.04	Orthogroups_2024-Update
Sopen12g004200	No alias	Chaperonin 10 Kd subunit	0.02	Orthogroups_2024-Update
Sopen12g004210	No alias	Chaperonin 10 Kd subunit	0.03	Orthogroups_2024-Update
evm.model.contig_2299.2	No alias	(q02073\|ch10c_spiol : 112.0) 20 kDa chaperonin,...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
BP	GO:0006457	protein folding	IEA	16Dec
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003735	structural constituent of ribosome	IEP	Predicted GO
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Predicted GO
MF	GO:0004427	inorganic diphosphatase activity	IEP	Predicted GO
MF	GO:0004784	superoxide dismutase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004820	glycine-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005198	structural molecule activity	IEP	Predicted GO
CC	GO:0005575	cellular_component	IEP	Predicted GO
CC	GO:0005737	cytoplasm	IEP	Predicted GO
CC	GO:0005840	ribosome	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006412	translation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006518	peptide metabolic process	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
BP	GO:0009058	biosynthetic process	IEP	Predicted GO
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Predicted GO
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	Predicted GO
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Predicted GO
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
CC	GO:0032991	protein-containing complex	IEP	Predicted GO
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043043	peptide biosynthetic process	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043603	cellular amide metabolic process	IEP	Predicted GO
BP	GO:0043604	amide biosynthetic process	IEP	Predicted GO
BP	GO:0044237	cellular metabolic process	IEP	Predicted GO
BP	GO:0044238	primary metabolic process	IEP	Predicted GO
BP	GO:0044249	cellular biosynthetic process	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
MF	GO:0051536	iron-sulfur cluster binding	IEP	Predicted GO
MF	GO:0051540	metal cluster binding	IEP	Predicted GO
BP	GO:0071704	organic substance metabolic process	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Predicted GO
BP	GO:1901576	organic substance biosynthetic process	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR020818	Chaperonin_GroES	59	148
IPR020818	Chaperonin_GroES	157	248

External Links

No external refs found!

Brara.J01552.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation