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  5. Brara.J01663.1

Brara.J01663.1


Description : rhamnogalacturonan-I O-acetyltransferase *(TBL)


Gene families : OG_42_0000293 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000293_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J01663.1
Cluster HCAA Clusters: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Bradi1g64470 No alias TRICHOME BIREFRINGENCE-LIKE 6 0.02 Orthogroups_2024-Update
Brara.E02920.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I04311.1 No alias polysaccharide O-acetyltransferase *(TBR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016740 transferase activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0007021 tubulin complex assembly IEP Predicted GO
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016255 attachment of GPI anchor to protein IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018196 peptidyl-asparagine modification IEP Predicted GO
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
MF GO:0048487 beta-tubulin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR025846 PMR5_N_dom 104 156
IPR026057 PC-Esterase 157 449
No external refs found!