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  5. Brara.J01811.1

Brara.J01811.1


Description : 2-hydroxy-phytanoyl-CoA lyase *(HPCL)


Gene families : OG_42_0007870 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007870_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J01811.1
Cluster HCAA Clusters: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
Seita.5G011400.1 No alias 2-hydroxy-phytanoyl-CoA lyase *(HPCL) 0.04 Orthogroups_2024-Update
Sobic.003G047100.1 No alias 2-hydroxy-phytanoyl-CoA lyase *(HPCL) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA 16Dec
MF GO:0003824 catalytic activity IEA 16Dec
MF GO:0030976 thiamine pyrophosphate binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0000976 transcription regulatory region sequence-specific DNA binding IEP Predicted GO
MF GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEP Predicted GO
MF GO:0001012 RNA polymerase II regulatory region DNA binding IEP Predicted GO
MF GO:0001067 regulatory region nucleic acid binding IEP Predicted GO
BP GO:0002376 immune system process IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
BP GO:0006955 immune response IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032422 purine-rich negative regulatory element binding IEP Predicted GO
BP GO:0034508 centromere complex assembly IEP Predicted GO
MF GO:0044212 transcription regulatory region DNA binding IEP Predicted GO
BP GO:0045087 innate immune response IEP Predicted GO
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011766 TPP_enzyme-bd_C 406 556
IPR012001 Thiamin_PyroP_enz_TPP-bd_dom 14 179
IPR012000 Thiamin_PyroP_enz_cen_dom 207 332
No external refs found!