Brara.J01949.1

Description : adherin *(SCC2)

Gene families : OG_42_0005149 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005149_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.J01949.1
Cluster	HCAA Clusters: Cluster_377

Target	Alias	Description	ECC score	Gene Family Method	Actions
Sopen03g014250	No alias	Sister chromatid cohesion C-terminus	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Predicted GO
CC	GO:0005795	Golgi stack	IEP	Predicted GO
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predicted GO
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Predicted GO
MF	GO:0008455	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	IEP	Predicted GO
BP	GO:0009311	oligosaccharide metabolic process	IEP	Predicted GO
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0016579	protein deubiquitination	IEP	Predicted GO
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Predicted GO
CC	GO:0031984	organelle subcompartment	IEP	Predicted GO
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Predicted GO
CC	GO:0044431	Golgi apparatus part	IEP	Predicted GO
BP	GO:0070646	protein modification by small protein removal	IEP	Predicted GO
CC	GO:0098791	Golgi subcompartment	IEP	Predicted GO
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Predicted GO
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR024986	Nipped-B_C	1390	1589
IPR019787	Znf_PHD-finger	707	752
IPR026003	Cohesin_HEAT	897	938

External Links

No external refs found!