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  5. Brara.J01954.1

Brara.J01954.1


Description : temperature sensor protein *(CNGC2) & cyclic nucleotide-gated cation channel *(CNGC)


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J01954.1
Cluster HCAA Clusters: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
A4A49_08512 No alias putative cyclic nucleotide-gated ion channel 20, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_32794 No alias cyclic nucleotide-gated ion channel 1 0.04 Orthogroups_2024-Update
Glyma.17G073500 No alias cyclic nucleotide gated channel 5 0.03 Orthogroups_2024-Update
LOC_Os09g38580 No alias cyclic nucleotide-gated ion channel, putative, expressed 0.02 Orthogroups_2024-Update
Potri.004G212300 No alias cyclic nucleotide-gated channel 15 0.03 Orthogroups_2024-Update
Pp1s204_120V6 No alias MKP6.28; cyclic nucleotide-binding transporter 1 / CNBT1... 0.03 Orthogroups_2024-Update
Seita.7G259800.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
Sopen12g001370 No alias Cyclic nucleotide-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA 16Dec
BP GO:0006811 ion transport IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 158 482
IPR000595 cNMP-bd_dom 583 673
No external refs found!