Brara.J01971.1

Description : zf-HD-type transcription factor

Gene families : OG_42_0000122 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000122_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.J01971.1
Cluster	HCAA Clusters: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
Brara.F00967.1	No alias	zf-HD-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G02896.1	No alias	zf-HD-type transcription factor	0.04	Orthogroups_2024-Update
Glyma.05G248200	No alias	homeobox protein 33	0.03	Orthogroups_2024-Update
Solyc04g074990	No alias	ZF-HD homeobox protein family (AHRD V3.3 - A0A151RTI4_CAJCA)	0.03	Orthogroups_2024-Update
Sopen02g016460	No alias	ZF-HD protein dimerisation region	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0003729	mRNA binding	IEP	Predicted GO
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0004089	carbonate dehydratase activity	IEP	Predicted GO
MF	GO:0004329	formate-tetrahydrofolate ligase activity	IEP	Predicted GO
MF	GO:0004525	ribonuclease III activity	IEP	Predicted GO
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predicted GO
BP	GO:0006366	transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0006378	mRNA polyadenylation	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
BP	GO:0031124	mRNA 3'-end processing	IEP	Predicted GO
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006456	ZF_HD_homeobox_Cys/His_dimer	55	108

External Links

No external refs found!