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  5. Brara.J02010.1

Brara.J02010.1


Description : phosphorolytic exoribonuclease *(PNP) & EC_2.7 transferase transferring phosphorus-containing group


Gene families : OG_42_0002046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J02010.1
Cluster HCAA Clusters: Cluster_326

Target Alias Description ECC score Gene Family Method Actions
84724 No alias polyribonucleotide nucleotidyltransferase, putative 0.05 Orthogroups_2024-Update
Bradi1g56280 No alias polyribonucleotide nucleotidyltransferase, putative 0.02 Orthogroups_2024-Update
Bradi3g48860 No alias polyribonucleotide nucleotidyltransferase, putative 0.04 Orthogroups_2024-Update
GRMZM2G392798 No alias polyribonucleotide nucleotidyltransferase, putative 0.03 Orthogroups_2024-Update
HORVU2Hr1G056650.13 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 Orthogroups_2024-Update
HORVU2Hr1G056710.5 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 Orthogroups_2024-Update
HORVU6Hr1G057570.8 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.03 Orthogroups_2024-Update
Kfl00059_0100 kfl00059_0100_v1.1 (at3g03710 : 796.0) Encodes a chloroplast polynucleotide... 0.02 Orthogroups_2024-Update
LOC_Os02g40460 No alias S1 RNA binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_10434926g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.02 Orthogroups_2024-Update
Potri.001G347900 No alias polyribonucleotide nucleotidyltransferase, putative 0.06 Orthogroups_2024-Update
Seita.1G235700.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.09 Orthogroups_2024-Update
Sobic.004G215900.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.08 Orthogroups_2024-Update
evm.model.tig00021073.40 No alias (at5g14580 : 307.0) polyribonucleotide... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0006396 RNA processing IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003029 S1_domain 672 741
IPR001247 ExoRNase_PH_dom1 61 190
IPR001247 ExoRNase_PH_dom1 371 503
IPR015847 ExoRNase_PH_dom2 193 255
IPR015848 PNPase_PH_RNA-bd_bac/org-type 289 368
No external refs found!