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  5. Brara.J02104.1

Brara.J02104.1


Description : RNA editing factor *(RARE1)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J02104.1
Cluster HCAA Clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
101093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
88824 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
At3g11460 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
Bradi4g38420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G080200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G373100.1 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Seita.9G202100.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.001G151300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G347100.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G436600.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.03 Orthogroups_2024-Update
Sobic.003G277100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G398900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G174800.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G199400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G210700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.008G179000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.02 Orthogroups_2024-Update
Sobic.010G066900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g041720 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g034780 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006874 cellular calcium ion homeostasis IEP Predicted GO
BP GO:0006875 cellular metal ion homeostasis IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
BP GO:0032469 endoplasmic reticulum calcium ion homeostasis IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0048878 chemical homeostasis IEP Predicted GO
BP GO:0050801 ion homeostasis IEP Predicted GO
BP GO:0055065 metal ion homeostasis IEP Predicted GO
BP GO:0055074 calcium ion homeostasis IEP Predicted GO
BP GO:0055080 cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
BP GO:0072503 cellular divalent inorganic cation homeostasis IEP Predicted GO
BP GO:0072507 divalent inorganic cation homeostasis IEP Predicted GO
BP GO:0098771 inorganic ion homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 348 396
IPR002885 Pentatricopeptide_repeat 57 92
IPR002885 Pentatricopeptide_repeat 450 498
IPR032867 DYW_dom 671 751
IPR002885 Pentatricopeptide_repeat 526 549
IPR002885 Pentatricopeptide_repeat 250 280
IPR002885 Pentatricopeptide_repeat 153 178
IPR002885 Pentatricopeptide_repeat 121 146
IPR002885 Pentatricopeptide_repeat 425 447
No external refs found!