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  5. Brara.J02245.1

Brara.J02245.1


Description : Unknown function


Gene families : OG_42_0005652 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005652_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J02245.1
Cluster HCAA Clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
404454 No alias transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
At5g11240 No alias At5g11240 [Source:UniProtKB/TrEMBL;Acc:B5X503] 0.05 Orthogroups_2024-Update
Bradi1g64927 No alias transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
Cre12.g538500 No alias transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
GRMZM2G095043 No alias transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
HORVU4Hr1G054880.13 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g18840 No alias NUC189 domain containing protein, expressed 0.03 Orthogroups_2024-Update
Mp5g00060.1 No alias no hits & (original description: none) 0.05 Orthogroups_2024-Update
Seita.9G435300.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Sobic.001G401400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc02g030080 No alias transducin family protein / WD-40 repeat family protein... 0.05 Orthogroups_2024-Update
Sopen02g009400 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
evm.model.contig_611.2 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
evm.model.tig00000123.23 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
CC GO:0000315 organellar large ribosomal subunit IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
CC GO:0005762 mitochondrial large ribosomal subunit IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 189 226
IPR007148 SSU_processome_Utp12 463 559
No external refs found!