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  5. At2g36100

At2g36100


Description : Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]


Gene families : OG_42_0000213 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At2g36100
Cluster HCCA clusters: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
A4A49_10250 No alias casp-like protein 1f1 0.01 Orthogroups_2024-Update
A4A49_12663 No alias casparian strip membrane protein 2 0.04 Orthogroups_2024-Update
A4A49_15920 No alias casparian strip membrane protein 1 0.03 Orthogroups_2024-Update
At2g27370 No alias Casparian strip membrane protein 3... 0.04 Orthogroups_2024-Update
Brara.D02195.1 No alias lignin polymerization scaffold protein *(CASP) 0.03 Orthogroups_2024-Update
Brara.F03733.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.15G191800 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Mp3g16500.1 No alias CASP-like protein 1U1 OS=Marchantia polymorpha... 0.02 Orthogroups_2024-Update
PSME_00003333-RA No alias (at2g36100 : 90.5) Uncharacterised protein family... 0.03 Orthogroups_2024-Update
PSME_00052040-RA No alias (at5g44550 : 92.4) Uncharacterised protein family... 0.03 Orthogroups_2024-Update
Pp1s160_119V6 No alias No description available 0.04 Orthogroups_2024-Update
Pp1s381_30V6 No alias F8M21.180; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Sobic.002G113100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen06g028910 No alias Domain of unknown function (DUF588) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002376 immune system process IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0006955 immune response IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0045087 innate immune response IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR006702 CASP_dom 43 190
No external refs found!