1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.J02392.1

Brara.J02392.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J02392.1
Cluster HCAA Clusters: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
At3g24230 No alias Probable pectate lyase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM5] 0.04 Orthogroups_2024-Update
At3g24670 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178VLR8] 0.03 Orthogroups_2024-Update
Brara.C00647.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Brara.I04991.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.17G011200 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G053800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
MA_10437227g0010 No alias (at4g24780 : 367.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_91467g0010 No alias (at4g24780 : 570.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00020782-RA No alias (at5g63180 : 492.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00032290-RA No alias (at4g24780 : 602.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Pp1s409_2V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Sobic.001G230400.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Sopen05g003050 No alias Pectate lyase 0.02 Orthogroups_2024-Update
Sopen05g033960 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 106 266
No external refs found!