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  5. Brara.J02480.1

Brara.J02480.1


Description : Unknown function


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J02480.1
Cluster HCAA Clusters: Cluster_404

Target Alias Description ECC score Gene Family Method Actions
A4A49_11165 No alias ring-h2 finger protein atl8 0.03 Orthogroups_2024-Update
A4A49_36900 No alias putative ring-h2 finger protein atl37 0.04 Orthogroups_2024-Update
A4A49_37314 No alias e3 ubiquitin-protein ligase atl9 0.01 Orthogroups_2024-Update
A4A49_40065 No alias ring-h2 finger protein atl70 0.03 Orthogroups_2024-Update
At1g35330 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT1G35330] 0.04 Orthogroups_2024-Update
At1g49210 No alias E3 ubiquitin-protein ligase ATL76... 0.01 Orthogroups_2024-Update
At2g42360 No alias E3 ubiquitin-protein ligase ATL41... 0.04 Orthogroups_2024-Update
At2g47560 No alias RING-H2 finger protein ATL64... 0.03 Orthogroups_2024-Update
At3g10910 No alias RING-H2 finger protein ATL72... 0.03 Orthogroups_2024-Update
At3g14320 No alias Putative RING-H2 finger protein ATL61... 0.05 Orthogroups_2024-Update
At3g19140 No alias Putative RING-H2 finger protein ATL62... 0.02 Orthogroups_2024-Update
At4g40070 No alias RING-H2 finger protein ATL32... 0.04 Orthogroups_2024-Update
At5g17600 No alias RING-H2 finger protein ATL52... 0.04 Orthogroups_2024-Update
Bradi2g49152 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g44733 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g32634 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g44454 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.02 Orthogroups_2024-Update
Brara.A00708.1 No alias regulatory E3 ubiquitin ligase targeted to IRT1 *(IDF1) 0.02 Orthogroups_2024-Update
Brara.B02006.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.B02009.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.B02021.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Brara.B02994.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.B03540.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.C01887.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G02364.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.I02588.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.K00768.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G386584 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G153500 No alias AtL5 0.03 Orthogroups_2024-Update
Glyma.10G083100 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G156500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G121400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G292600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G177900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G157400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G030900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G016510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU0Hr1G021450.9 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G042940.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G080020.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
LOC_Os01g11460 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g11520 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g35329 No alias RING-H2 finger protein ATL3F, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g42530 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_10244600g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_26001g0020 No alias (at1g72310 : 117.0) Encodes a putative RING-H2 zinc... 0.04 Orthogroups_2024-Update
MA_308999g0010 No alias (at1g72310 : 80.9) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
MA_569551g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_80729g0030 No alias (at3g16720 : 139.0) RING-H2 protein induced after... 0.04 Orthogroups_2024-Update
MA_81046g0010 No alias (at1g49230 : 127.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
Potri.001G032300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.001G309600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G192700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G036800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G201500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.007G057300 No alias RING-H2 finger A3A 0.03 Orthogroups_2024-Update
Potri.010G235200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G025800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.013G073500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.019G010500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.019G010600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Pp1s71_162V6 No alias ring finger 0.02 Orthogroups_2024-Update
Sobic.004G170300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc04g009780 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061FQW5_THECC) 0.03 Orthogroups_2024-Update
Solyc05g055140 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061FQW5_THECC) 0.03 Orthogroups_2024-Update
Solyc08g076830 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc11g005290 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G49230.1) 0.02 Orthogroups_2024-Update
Solyc11g073170 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.03 Orthogroups_2024-Update
Sopen01g048080 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen04g006320 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen11g001290 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen11g001320 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008200 ion channel inhibitor activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016247 channel regulator activity IEP Predicted GO
MF GO:0016248 channel inhibitor activity IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
MF GO:0017080 sodium channel regulator activity IEP Predicted GO
MF GO:0019871 sodium channel inhibitor activity IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0099106 ion channel regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 92 134
No external refs found!