1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.J02539.1

Brara.J02539.1


Description : pathogen polygalacturonase inhibitor *(PGIP)


Gene families : OG_42_0000642 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000642_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J02539.1
Cluster HCAA Clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
At1g33670 No alias Leucine-rich repeat (LRR) family protein... 0.03 Orthogroups_2024-Update
At5g06860 No alias PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4] 0.03 Orthogroups_2024-Update
Bradi1g24230 No alias polygalacturonase inhibiting protein 1 0.04 Orthogroups_2024-Update
Brara.C00270.1 No alias pathogen polygalacturonase inhibitor *(PGIP) 0.04 Orthogroups_2024-Update
Brara.J02543.1 No alias pathogen polygalacturonase inhibitor *(PGIP) 0.03 Orthogroups_2024-Update
Glyma.06G319700 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Kfl00196_0130 kfl00196_0130_v1.... (at5g46330 : 203.0) Encodes a leucine-rich repeat... 0.02 Orthogroups_2024-Update
LOC_Os05g01380 No alias polygalacturonase inhibitor precursor, putative, expressed 0.02 Orthogroups_2024-Update
Mp5g13350.1 No alias Probably inactive leucine-rich repeat receptor-like... 0.04 Orthogroups_2024-Update
Potri.006G058600 No alias polygalacturonase inhibiting protein 1 0.03 Orthogroups_2024-Update
Seita.3G071400.1 No alias pathogen polygalacturonase inhibitor *(PGIP) 0.02 Orthogroups_2024-Update
Sobic.009G002400.2 No alias pathogen polygalacturonase inhibitor *(PGIP) 0.04 Orthogroups_2024-Update
Sopen10g023690 No alias Leucine rich repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0001101 response to acid chemical IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008200 ion channel inhibitor activity IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
MF GO:0016247 channel regulator activity IEP Predicted GO
MF GO:0016248 channel inhibitor activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0017080 sodium channel regulator activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
MF GO:0019871 sodium channel inhibitor activity IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
BP GO:0031179 peptide modification IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
MF GO:0099106 ion channel regulator activity IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 123 181
IPR013210 LRR_N_plant-typ 27 65
No external refs found!