Brara.J02602.1

Description : regulatory factor SNX1 of Retromer protein recycling complex

Gene families : OG_42_0004304 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004304_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.J02602.1
Cluster	HCAA Clusters: Cluster_343

Target	Alias	Description	ECC score	Gene Family Method	Actions
HORVU3Hr1G083780.7	No alias	regulatory factor SNX1 of Retromer protein recycling complex	0.02	Orthogroups_2024-Update
LOC_Os01g64280	No alias	sorting nexin 1, putative, expressed	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005543	phospholipid binding	None	Extended
MF	GO:0008289	lipid binding	None	Extended
MF	GO:0035091	phosphatidylinositol binding	IEA	16Dec
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0007034	vacuolar transport	IEP	Predicted GO
BP	GO:0030258	lipid modification	IEP	Predicted GO
BP	GO:0030259	lipid glycosylation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR015404	Vps5_C	175	394
IPR001683	Phox	58	137

External Links

No external refs found!