Brara.J02651.1

Description : methylation reader Alfin of PRC1 complex

Gene families : OG_42_0000222 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000222_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.J02651.1
Cluster	HCAA Clusters: Cluster_287

Target	Alias	Description	ECC score	Gene Family Method
99900	No alias	alfin-like 3	0.02	Orthogroups_2024-Update
Glyma.03G057300	No alias	alfin-like 1	0.04	Orthogroups_2024-Update
MA_86172g0010	No alias	(at3g11200 : 155.0) AL2 encodes a member of the...	0.03	Orthogroups_2024-Update
Potri.006G100900	No alias	alfin-like 1	0.03	Orthogroups_2024-Update
Sobic.001G037000.1	No alias	methylation reader Alfin of PRC1 complex	0.03	Orthogroups_2024-Update
Sobic.003G382100.1	No alias	methylation reader Alfin of PRC1 complex	0.03	Orthogroups_2024-Update
Solyc09g005360	No alias	PHD finger alfin-like protein (AHRD V3.3 *** A0A072UGM4_MEDTR)	0.03	Orthogroups_2024-Update
Solyc12g096040	No alias	PHD finger alfin-like protein (AHRD V3.3 *** A0A072V846_MEDTR)	0.03	Orthogroups_2024-Update
Sopen06g022310	No alias	Domain of unknown function (DUF3594)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0042393	histone binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	IEP	Predicted GO
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Predicted GO
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	Predicted GO
MF	GO:0004525	ribonuclease III activity	IEP	Predicted GO
MF	GO:0004620	phospholipase activity	IEP	Predicted GO
MF	GO:0004629	phospholipase C activity	IEP	Predicted GO
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Predicted GO
MF	GO:0005253	anion channel activity	IEP	Predicted GO
MF	GO:0005254	chloride channel activity	IEP	Predicted GO
CC	GO:0005778	peroxisomal membrane	IEP	Predicted GO
BP	GO:0006006	glucose metabolic process	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0010035	response to inorganic substance	IEP	Predicted GO
BP	GO:0010167	response to nitrate	IEP	Predicted GO
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015698	inorganic anion transport	IEP	Predicted GO
BP	GO:0015706	nitrate transport	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO
BP	GO:0016559	peroxisome fission	IEP	Predicted GO
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Predicted GO
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Predicted GO
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Predicted GO
BP	GO:0019318	hexose metabolic process	IEP	Predicted GO
CC	GO:0031903	microbody membrane	IEP	Predicted GO
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Predicted GO
CC	GO:0042579	microbody	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO
CC	GO:0044438	microbody part	IEP	Predicted GO
CC	GO:0044439	peroxisomal part	IEP	Predicted GO
BP	GO:0048285	organelle fission	IEP	Predicted GO
MF	GO:0070566	adenylyltransferase activity	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO
BP	GO:1901698	response to nitrogen compound	IEP	Predicted GO
BP	GO:1901700	response to oxygen-containing compound	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR019787	Znf_PHD-finger	187	235
IPR021998	Alfin	10	136

External Links

No external refs found!

Brara.J02651.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation