1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.J02833.1

Brara.J02833.1


Description : UBQ ubiquitin-fold protein


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J02833.1
Cluster HCAA Clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
163447 No alias ubiquitin 4 0.02 Orthogroups_2024-Update
Glyma.13G176100 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Kfl00037_0290 kfl00037_0290_v1.1 (at4g05320 : 880.0) One of five polyubiquitin genes in... 0.02 Orthogroups_2024-Update
LOC_Os05g38310 No alias ubiquitin family protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10426807g0010 No alias (at5g03240 : 406.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
MA_6985771g0010 No alias (at5g03240 : 211.0) encodes ubiquitin that is attached... 0.04 Orthogroups_2024-Update
Mp8g11720.1 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis... 0.02 Orthogroups_2024-Update
Seita.4G259900.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Sopen07g032270 No alias Ubiquitin family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0031011 Ino80 complex IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 231 302
IPR000626 Ubiquitin_dom 383 454
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 155 226
IPR000626 Ubiquitin_dom 307 378
IPR000626 Ubiquitin_dom 459 530
IPR000626 Ubiquitin_dom 79 150
No external refs found!