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  5. Brara.J02851.1

Brara.J02851.1


Description : circadian clock factor *(REVEILLE) & transcription factor *(REVEILLE)


Gene families : OG_42_0000380 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000380_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J02851.1
Cluster HCAA Clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
At2g46830 No alias Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973] 0.05 Orthogroups_2024-Update
At3g09600 No alias Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3] 0.07 Orthogroups_2024-Update
At4g01280 No alias Protein REVEILLE 5 [Source:UniProtKB/Swiss-Prot;Acc:C0SVG5] 0.05 Orthogroups_2024-Update
At5g02840 No alias LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5] 0.05 Orthogroups_2024-Update
At5g17300 No alias Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6] 0.04 Orthogroups_2024-Update
Brara.E00100.1 No alias circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 Orthogroups_2024-Update
Cre12.g514400 No alias circadian clock associated 1 0.01 Orthogroups_2024-Update
GRMZM2G029850 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G115070 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G118693 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G170322 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G241000 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G255302 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G048500 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G211643 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.14G210600 No alias Homeodomain-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.16G178700 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G044200 No alias Homeodomain-like superfamily protein 0.06 Orthogroups_2024-Update
HORVU0Hr1G031850.2 No alias circadian clock factor *(REVEILLE) & transcription... 0.04 Orthogroups_2024-Update
HORVU6Hr1G066000.2 No alias circadian clock factor *(REVEILLE) & transcription... 0.04 Orthogroups_2024-Update
HORVU7Hr1G001830.3 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
HORVU7Hr1G121210.4 No alias transcription factor *(REVEILLE) 0.04 Orthogroups_2024-Update
Kfl00237_0160 kfl00237_0160_v1.1 (at5g52660 : 124.0) Homeodomain-like superfamily... 0.01 Orthogroups_2024-Update
Kfl00255_0190 kfl00255_0190_v1.... (at1g01060 : 122.0) LHY encodes a myb-related putative... 0.02 Orthogroups_2024-Update
LOC_Os02g45670 No alias myb-like DNA-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g01670 No alias myb-like DNA-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
Mp2g14310.1 No alias transcription factor (MYB-related). REVEILLE circadian... 0.02 Orthogroups_2024-Update
Potri.017G144800 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G288100.1 No alias transcription factor *(REVEILLE) 0.03 Orthogroups_2024-Update
Sobic.004G279300.1 No alias transcription factor *(REVEILLE) 0.02 Orthogroups_2024-Update
Sobic.004G281800.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
Sobic.010G004300.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.06 Orthogroups_2024-Update
Solyc01g095030 No alias Myb family transcription factor family protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen01g038820 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen03g029070 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0005672 transcription factor TFIIA complex IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0010921 regulation of phosphatase activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0019781 NEDD8 activating enzyme activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0019902 phosphatase binding IEP Predicted GO
MF GO:0019903 protein phosphatase binding IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0035303 regulation of dephosphorylation IEP Predicted GO
BP GO:0035304 regulation of protein dephosphorylation IEP Predicted GO
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0045116 protein neddylation IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 47 92
No external refs found!