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  5. Brara.K00198.1

Brara.K00198.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.K00198.1
Cluster HCAA Clusters: Cluster_394

Target Alias Description ECC score Gene Family Method Actions
A4A49_11564 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
A4A49_14235 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
A4A49_15806 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
A4A49_26362 No alias floral homeotic protein globosa 0.03 Orthogroups_2024-Update
A4A49_29655 No alias floral homeotic protein globosa 0.04 Orthogroups_2024-Update
At1g24260 No alias At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9] 0.03 Orthogroups_2024-Update
At1g77980 No alias Agamous-like MADS-box protein AGL66... 0.03 Orthogroups_2024-Update
At2g24840 No alias Agamous-like MADS-box protein AGL61... 0.04 Orthogroups_2024-Update
At4g22950 No alias Agamous-like MADS-box protein AGL19... 0.03 Orthogroups_2024-Update
At5g60910 No alias Agamous-like MADS-box protein AGL8... 0.03 Orthogroups_2024-Update
Bradi2g24940 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Brara.B01837.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.04 Orthogroups_2024-Update
Brara.C00582.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Brara.C00694.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Brara.C04211.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 Orthogroups_2024-Update
Brara.D00221.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E00310.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Brara.E02241.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.J00749.1 No alias MADS/AGL-type transcription factor 0.05 Orthogroups_2024-Update
GRMZM2G133568 No alias AGAMOUS-like 16 0.02 Orthogroups_2024-Update
GRMZM2G171365 No alias AGAMOUS-like 20 0.03 Orthogroups_2024-Update
Glyma.03G019300 No alias AGAMOUS-like 20 0.04 Orthogroups_2024-Update
Glyma.05G050700 No alias AGAMOUS-like 19 0.03 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
Glyma.05G227300 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Glyma.08G250800 No alias AGAMOUS-like 8 0.03 Orthogroups_2024-Update
Glyma.08G282500 No alias AGAMOUS-like 29 0.03 Orthogroups_2024-Update
Glyma.09G266400 No alias AGAMOUS-like 6 0.03 Orthogroups_2024-Update
Glyma.10G085100 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Glyma.20G136700 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
HORVU0Hr1G032300.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
HORVU3Hr1G095090.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os01g69850 No alias OsMADS65 - MADS-box family gene with MIKC* type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g06860 No alias OsMADS80 - MADS-box family gene with M-alpha type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g07430 No alias OsMADS29 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g03070 No alias transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g11414 No alias OsMADS58 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g21850 No alias OsMADS73 - MADS-box family gene with M-alpha type-box, expressed 0.02 Orthogroups_2024-Update
MA_211156g0010 No alias (q40885|ag_pethy : 164.0) Floral homeotic protein... 0.03 Orthogroups_2024-Update
MA_35712g0010 No alias (at4g11880 : 102.0) AGL12, AGL14, and AGL17 are all... 0.03 Orthogroups_2024-Update
Potri.001G284301 No alias AGAMOUS-like 21 0.03 Orthogroups_2024-Update
Potri.003G119700 No alias AGAMOUS-like 19 0.03 Orthogroups_2024-Update
Potri.004G002400 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Potri.005G150501 No alias AGAMOUS-like 16 0.03 Orthogroups_2024-Update
Pp1s163_73V6 No alias mikc* mads-box transcription factor 0.02 Orthogroups_2024-Update
Pp1s88_174V6 No alias mads box 0.02 Orthogroups_2024-Update
Seita.3G280400.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Seita.6G194800.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G406800.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Solyc01g105800 No alias MADS box transcription factor (AHRD V1 **--... 0.02 Orthogroups_2024-Update
Sopen01g037760 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update
Sopen02g034000 No alias K-box region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 85 157
No external refs found!