Brara.K00412.1

Description : component *(VPS35) of Retromer protein recycling complex

Gene families : OG_42_0002635 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002635_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.K00412.1
Cluster	HCAA Clusters: Cluster_94

Target	Alias	Description	ECC score	Gene Family Method
Brara.G00237.1	No alias	component *(VPS35) of Retromer protein recycling complex	0.04	Orthogroups_2024-Update
Kfl00198_0230	kfl00198_0230_v1.1	(at2g17790 : 962.0) Encodes a protein with similarity to...	0.02	Orthogroups_2024-Update
Pp1s456_14V6	No alias	vacuolar sorting protein 35	0.02	Orthogroups_2024-Update
evm.model.contig_3480.4	No alias	(at1g75850 : 269.0) VPS35 homolog B (VPS35B); CONTAINS...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	IEA	16Dec
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
CC	GO:0030906	retromer, cargo-selective complex	IEA	16Dec
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	16Dec
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predicted GO
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Predicted GO
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0007264	small GTPase mediated signal transduction	IEP	Predicted GO
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predicted GO
CC	GO:0045275	respiratory chain complex III	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
CC	GO:0070069	cytochrome complex	IEP	Predicted GO
CC	GO:0070469	respiratory chain	IEP	Predicted GO
CC	GO:0098803	respiratory chain complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005378	Vps35	1	657

External Links

No external refs found!