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  5. Brara.K00477.1

Brara.K00477.1


Description : Unknown function


Gene families : OG_42_0008180 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008180_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.K00477.1
Cluster HCAA Clusters: Cluster_366

Target Alias Description ECC score Gene Family Method Actions
PSME_00024262-RA No alias (at5g46680 : 331.0) Pentatricopeptide repeat (PPR-like)... 0.06 Orthogroups_2024-Update
Solyc07g055220 No alias Pentatricopeptide repeat-containing protein, putative... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0019905 syntaxin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 113 141
IPR002885 Pentatricopeptide_repeat 221 269
IPR002885 Pentatricopeptide_repeat 292 339
IPR002885 Pentatricopeptide_repeat 46 94
IPR002885 Pentatricopeptide_repeat 156 200
IPR002885 Pentatricopeptide_repeat 362 406
No external refs found!