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  5. Brara.K00527.1

Brara.K00527.1


Description : RNA editing factor *(MEF29)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.K00527.1
Cluster HCAA Clusters: Cluster_274

Target Alias Description ECC score Gene Family Method Actions
111075 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
83034 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
At1g06140 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.04 Orthogroups_2024-Update
At2g03880 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Orthogroups_2024-Update
At3g03580 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Orthogroups_2024-Update
At3g20730 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.04 Orthogroups_2024-Update
Bradi1g03670 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi5g14000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Brara.C01258.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G01460.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.H01226.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G143377 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Glyma.02G227300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
HORVU4Hr1G021240.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G079090.7 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_168311g0010 No alias (at4g02750 : 377.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_41676g0020 No alias (at3g24000 : 462.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_68707g0010 No alias (at3g24000 : 546.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Potri.006G001200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.012G111900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Sobic.010G197400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc11g064750 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen06g022100 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g003140 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0017062 respiratory chain complex III assembly IEP Predicted GO
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Predicted GO
BP GO:0034551 mitochondrial respiratory chain complex III assembly IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 86 112
IPR002885 Pentatricopeptide_repeat 531 550
IPR002885 Pentatricopeptide_repeat 161 184
IPR002885 Pentatricopeptide_repeat 187 214
IPR002885 Pentatricopeptide_repeat 286 330
IPR002885 Pentatricopeptide_repeat 486 526
IPR002885 Pentatricopeptide_repeat 387 432
IPR032867 DYW_dom 701 793
No external refs found!