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  5. Brara.K00653.1

Brara.K00653.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.K00653.1
Cluster HCAA Clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
A4A49_41445 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
At2g23900 No alias Glycoside hydrolase family 28 protein/polygalacturonase... 0.03 Orthogroups_2024-Update
GRMZM2G348602 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G071500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G179000 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os09g26800 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00040829-RA No alias (at3g61490 : 545.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Seita.4G004900.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Solyc06g060170 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G33440.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 108 448
No external refs found!