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  5. Brara.K00935.1

Brara.K00935.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.K00935.1
Cluster HCAA Clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.04 Orthogroups_2024-Update
A4A49_16129 No alias putative pectate lyase 18 0.03 Orthogroups_2024-Update
A4A49_23917 No alias putative pectate lyase 13 0.03 Orthogroups_2024-Update
A4A49_40134 No alias putative pectate lyase p59 0.03 Orthogroups_2024-Update
At1g67750 No alias Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8] 0.04 Orthogroups_2024-Update
Brara.C00647.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Glyma.06G174700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G011200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G126500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
MA_103716g0010 No alias (at1g67750 : 486.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00005709-RA No alias (at3g07010 : 494.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00009672-RA No alias (at5g48900 : 608.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Potri.015G087800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s409_2V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Pp1s84_82V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Seita.4G033100.1 No alias EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Solyc03g058890 No alias Pectate lyase (AHRD V3.3 *** K4BGT7_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g083580 No alias Pectate lyase (AHRD V3.3 *** A0A022QXK5_ERYGU) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 194 375
IPR007524 Pec_lyase_N 14 87
No external refs found!