1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.K01021.1

Brara.K01021.1


Description : HD-ZIP IV-type transcription factor


Gene families : OG_42_0000114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.K01021.1
Cluster HCAA Clusters: Cluster_352

Target Alias Description ECC score Gene Family Method Actions
At1g73360 No alias Homeobox-leucine zipper protein HDG11... 0.03 Orthogroups_2024-Update
Bradi3g15327 No alias protodermal factor 2 0.03 Orthogroups_2024-Update
Brara.H00913.1 No alias HD-ZIP IV-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.05G248800 No alias homeodomain GLABROUS 11 0.02 Orthogroups_2024-Update
HORVU0Hr1G013510.1 No alias HD-ZIP IV-type transcription factor 0.02 Orthogroups_2024-Update
Potri.002G230200 No alias homeodomain GLABROUS 2 0.03 Orthogroups_2024-Update
Solyc01g091630 No alias cutin deficient 2 0.03 Orthogroups_2024-Update
Solyc02g080260 No alias Woolly 0.02 Orthogroups_2024-Update
Solyc06g050160 No alias Homeobox leucine zipper protein (AHRD V3.3 *** A0A072TNH2_MEDTR) 0.02 Orthogroups_2024-Update
Sopen03g028900 No alias START domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0008289 lipid binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003997 acyl-CoA oxidase activity IEP Predicted GO
MF GO:0004615 phosphomannomutase activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006635 fatty acid beta-oxidation IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009062 fatty acid catabolic process IEP Predicted GO
BP GO:0009225 nucleotide-sugar metabolic process IEP Predicted GO
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Predicted GO
BP GO:0009298 GDP-mannose biosynthetic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0019395 fatty acid oxidation IEP Predicted GO
BP GO:0019673 GDP-mannose metabolic process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0034440 lipid oxidation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0044242 cellular lipid catabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
BP GO:0072329 monocarboxylic acid catabolic process IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 63 118
IPR002913 START_lipid-bd_dom 261 479
No external refs found!