$( document ).ready(function() { $.getJSON( "/profile/json/plot/392865", function( data ) { var ctx = document.getElementById("chart-area").getContext("2d"); data['options']['responsive'] = true; data['options']['maintainAspectRatio'] = false; data['options']['tooltips'] = { enabled: true, mode: 'label', itemSort: function(a, b, data) { conversion = {'Minimum': 0, 'Mean - Stdev':0, 'Mean': 1, 'Maximum': 2, 'Mean + Stdev': 2} if (conversion[data.datasets[a.datasetIndex].label] > conversion[data.datasets[b.datasetIndex].label]) { return -1 } else if (conversion[data.datasets[a.datasetIndex].label] < conversion[data.datasets[b.datasetIndex].label]) { return 1 } else { return 0 } }, callbacks: { afterTitle: function(tooltipItems, data) { if (data.counts[tooltipItems[0].index] == null) { return null; } else { if (data.counts[tooltipItems[0].index] == 1) { return '(1 sample)'; } else { return '(' + data.counts[tooltipItems[0].index] + ' samples)'; } } }, label: function(tooltipItems, data) { return data.datasets[tooltipItems.datasetIndex].label + ': ' + tooltipItems.yLabel.toFixed(2); } } } var myChart = new Chart(ctx, data); if (myChart.options.zoom.enabled) { $("#enable_zoom").addClass("btn-success"); $("#enable_zoom").removeClass("btn-danger"); $("#enable_zoom").removeClass("btn-default"); } else { $("#enable_zoom").addClass("btn-danger"); $("#enable_zoom").removeClass("btn-success"); $("#enable_zoom").removeClass("btn-default"); } $("#enable_zoom").click( function(ev) { ev.preventDefault(); myChart.options.zoom.enabled = ! myChart.options.zoom.enabled; if (myChart.options.zoom.enabled) { $(this).addClass("btn-success"); $(this).removeClass("btn-danger"); $(this).removeClass("btn-default"); } else { $(this).addClass("btn-danger"); $(this).removeClass("btn-success"); $(this).removeClass("btn-default"); } }); if (myChart.options.pan.enabled) { $("#enable_pan").addClass("btn-success"); $("#enable_pan").removeClass("btn-danger"); $("#enable_pan").removeClass("btn-default"); } else { $("#enable_pan").addClass("btn-danger"); $("#enable_pan").removeClass("btn-success"); $("#enable_pan").removeClass("btn-default"); } $("#enable_pan").click( function(ev) { ev.preventDefault(); myChart.options.pan.enabled = ! myChart.options.pan.enabled; if (myChart.options.pan.enabled) { $(this).addClass("btn-success"); $(this).removeClass("btn-danger"); $(this).removeClass("btn-default"); } else { $(this).addClass("btn-danger"); $(this).removeClass("btn-success"); $(this).removeClass("btn-default"); } }); }); }); $( document ).ready(function() { $.getJSON( "/profile/json/plot/392865/26", function( data ) { var ctx = document.getElementById("chart-area-26").getContext("2d"); data['options']['responsive'] = true; data['options']['maintainAspectRatio'] = false; data['options']['tooltips'] = { enabled: true, mode: 'label', itemSort: function(a, b, data) { conversion = {'Minimum': 0, 'Mean - Stdev':0, 'Mean': 1, 'Maximum': 2, 'Mean + Stdev': 2} if (conversion[data.datasets[a.datasetIndex].label] > conversion[data.datasets[b.datasetIndex].label]) { return -1 } else if (conversion[data.datasets[a.datasetIndex].label] < conversion[data.datasets[b.datasetIndex].label]) { return 1 } else { return 0 } }, callbacks: { afterTitle: function(tooltipItems, data) { if (data.counts[tooltipItems[0].index] == null) { return null; } else { if (data.counts[tooltipItems[0].index] == 1) { return '(1 sample)'; } else { return '(' + data.counts[tooltipItems[0].index] + ' samples)'; } } }, label: function(tooltipItems, data) { return data.datasets[tooltipItems.datasetIndex].label + ': ' + tooltipItems.yLabel.toFixed(2); } } } var myChart = new Chart(ctx, data); if (myChart.options.zoom.enabled) { $("#enable_zoom-26").addClass("btn-success"); $("#enable_zoom-26").removeClass("btn-danger"); $("#enable_zoom-26").removeClass("btn-default"); } else { $("#enable_zoom-26").addClass("btn-danger"); $("#enable_zoom-26").removeClass("btn-success"); $("#enable_zoom-26").removeClass("btn-default"); } $("#enable_zoom-26").click( function(ev) { ev.preventDefault(); myChart.options.zoom.enabled = ! myChart.options.zoom.enabled; if (myChart.options.zoom.enabled) { $(this).addClass("btn-success"); $(this).removeClass("btn-danger"); $(this).removeClass("btn-default"); } else { $(this).addClass("btn-danger"); $(this).removeClass("btn-success"); $(this).removeClass("btn-default"); } }); if (myChart.options.pan.enabled) { $("#enable_pan-26").addClass("btn-success"); $("#enable_pan-26").removeClass("btn-danger"); $("#enable_pan-26").removeClass("btn-default"); } else { $("#enable_pan-26").addClass("btn-danger"); $("#enable_pan-26").removeClass("btn-success"); $("#enable_pan-26").removeClass("btn-default"); } $("#enable_pan-26").click( function(ev) { ev.preventDefault(); myChart.options.pan.enabled = ! myChart.options.pan.enabled; if (myChart.options.pan.enabled) { $(this).addClass("btn-success"); $(this).removeClass("btn-danger"); $(this).removeClass("btn-default"); } else { $(this).addClass("btn-danger"); $(this).removeClass("btn-success"); $(this).removeClass("btn-default"); } }); }); }); $( document ).ready(function() { $.getJSON( "/profile/json/plot/392865/27", function( data ) { var ctx = document.getElementById("chart-area-27").getContext("2d"); data['options']['responsive'] = true; data['options']['maintainAspectRatio'] = false; data['options']['tooltips'] = { enabled: true, mode: 'label', itemSort: function(a, b, data) { conversion = {'Minimum': 0, 'Mean - Stdev':0, 'Mean': 1, 'Maximum': 2, 'Mean + Stdev': 2} if (conversion[data.datasets[a.datasetIndex].label] > conversion[data.datasets[b.datasetIndex].label]) { return -1 } else if (conversion[data.datasets[a.datasetIndex].label] < conversion[data.datasets[b.datasetIndex].label]) { return 1 } else { return 0 } }, callbacks: { afterTitle: function(tooltipItems, data) { if (data.counts[tooltipItems[0].index] == null) { return null; } else { if (data.counts[tooltipItems[0].index] == 1) { return '(1 sample)'; } else { return '(' + data.counts[tooltipItems[0].index] + ' samples)'; } } }, label: function(tooltipItems, data) { return data.datasets[tooltipItems.datasetIndex].label + ': ' + tooltipItems.yLabel.toFixed(2); } } } var myChart = new Chart(ctx, data); if (myChart.options.zoom.enabled) { $("#enable_zoom-27").addClass("btn-success"); $("#enable_zoom-27").removeClass("btn-danger"); $("#enable_zoom-27").removeClass("btn-default"); } else { $("#enable_zoom-27").addClass("btn-danger"); $("#enable_zoom-27").removeClass("btn-success"); $("#enable_zoom-27").removeClass("btn-default"); } $("#enable_zoom-27").click( function(ev) { ev.preventDefault(); myChart.options.zoom.enabled = ! myChart.options.zoom.enabled; if (myChart.options.zoom.enabled) { $(this).addClass("btn-success"); $(this).removeClass("btn-danger"); $(this).removeClass("btn-default"); } else { $(this).addClass("btn-danger"); $(this).removeClass("btn-success"); $(this).removeClass("btn-default"); } }); if (myChart.options.pan.enabled) { $("#enable_pan-27").addClass("btn-success"); $("#enable_pan-27").removeClass("btn-danger"); $("#enable_pan-27").removeClass("btn-default"); } else { $("#enable_pan-27").addClass("btn-danger"); $("#enable_pan-27").removeClass("btn-success"); $("#enable_pan-27").removeClass("btn-default"); } $("#enable_pan-27").click( function(ev) { ev.preventDefault(); myChart.options.pan.enabled = ! myChart.options.pan.enabled; if (myChart.options.pan.enabled) { $(this).addClass("btn-success"); $(this).removeClass("btn-danger"); $(this).removeClass("btn-default"); } else { $(this).addClass("btn-danger"); $(this).removeClass("btn-success"); $(this).removeClass("btn-default"); } }); }); });
  1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.K01143.1

Brara.K01143.1


Description : component *(DDR) of ISWI chromatin remodeling complex


Gene families : OG_42_0002059 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002059_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.K01143.1
Cluster HCAA Clusters: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
At5g25580 No alias Uncharacterized protein At5g25580... 0.03 Orthogroups_2024-Update
HORVU2Hr1G051850.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Potri.006G244800 No alias DDT domain superfamily 0.03 Orthogroups_2024-Update
Potri.012G072200 No alias DDT domain superfamily 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!