Brara.K01326.1

Description : component *(uL2) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001760 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001760_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.K01326.1
Cluster	HCAA Clusters: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
170971	No alias	Ribosomal protein L2 family	0.16	Orthogroups_2024-Update
A4A49_56239	No alias	60s ribosomal protein l8	0.13	Orthogroups_2024-Update
A4A49_64891	No alias	60s ribosomal protein l8	0.04	Orthogroups_2024-Update
Bradi4g04120	No alias	Ribosomal protein L2 family	0.15	Orthogroups_2024-Update
Cre12.g535851	No alias	Ribosomal protein L2 family	0.13	Orthogroups_2024-Update
Glyma.01G167300	No alias	Ribosomal protein L2 family	0.22	Orthogroups_2024-Update
Glyma.02G049300	No alias	Ribosomal protein L2 family	0.14	Orthogroups_2024-Update
Glyma.11G076000	No alias	Ribosomal protein L2 family	0.06	Orthogroups_2024-Update
Glyma.16G129700	No alias	Ribosomal protein L2 family	0.07	Orthogroups_2024-Update
HORVU5Hr1G021730.2	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.22	Orthogroups_2024-Update
Kfl00779_0020	kfl00779_0020_v1.1	(at4g36130 : 456.0) Ribosomal protein L2 family;...	0.06	Orthogroups_2024-Update
Mp7g01860.1	No alias	component RPL8 of LSU proteome component	0.15	Orthogroups_2024-Update
Mp7g08730.1	No alias	component RPL8 of LSU proteome component	0.04	Orthogroups_2024-Update
PSME_00025506-RA	No alias	(at4g36130 : 481.0) Ribosomal protein L2 family;...	0.03	Orthogroups_2024-Update
Potri.007G013100	No alias	Ribosomal protein L2 family	0.07	Orthogroups_2024-Update
Pp1s37_247V6	No alias	60s ribosomal protein l2	0.23	Orthogroups_2024-Update
Seita.2G112000.1	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.29	Orthogroups_2024-Update
Seita.3G330100.1	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
Sobic.002G115000.1	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Sobic.008G135000.1	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.32	Orthogroups_2024-Update
Solyc07g063890	No alias	No description available	0.08	Orthogroups_2024-Update
Solyc10g006580	No alias	ribosomal protein L2	0.1	Orthogroups_2024-Update
Solyc12g005330	No alias	Ribosomal protein L2 family (AHRD V3.3 *** AT4G36130.1)	0.32	Orthogroups_2024-Update
Sopen07g032020	No alias	Ribosomal Proteins L2, C-terminal domain	0.41	Orthogroups_2024-Update
Sopen10g002530	No alias	Ribosomal Proteins L2, C-terminal domain	0.24	Orthogroups_2024-Update
Sopen12g001310	No alias	Ribosomal Proteins L2, C-terminal domain	0.2	Orthogroups_2024-Update
evm.model.contig_2057.10	No alias	(at4g36130 : 380.0) Ribosomal protein L2 family;...	0.45	Orthogroups_2024-Update
evm.model.tig00020965.22	No alias	(at2g18020 : 400.0) embryo defective 2296 (EMB2296);...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004017	adenylate kinase activity	IEP	Predicted GO
MF	GO:0004637	phosphoribosylamine-glycine ligase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
BP	GO:0006144	purine nucleobase metabolic process	IEP	Predicted GO
BP	GO:0009112	nucleobase metabolic process	IEP	Predicted GO
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0042440	pigment metabolic process	IEP	Predicted GO
BP	GO:0046112	nucleobase biosynthetic process	IEP	Predicted GO
BP	GO:0046148	pigment biosynthetic process	IEP	Predicted GO
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predicted GO
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR022669	Ribosomal_L2_C	98	225
IPR022666	Rbsml_prot_L2_RNA-bd_dom	13	89

External Links

No external refs found!

Brara.K01326.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation