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  5. Brara.K01453.1

Brara.K01453.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.K01453.1
Cluster HCAA Clusters: Cluster_329

Target Alias Description ECC score Gene Family Method Actions
Cre08.g381600 No alias expansin A24 0.02 Orthogroups_2024-Update
GRMZM2G073373 No alias expansin 11 0.02 Orthogroups_2024-Update
GRMZM2G339122 No alias expansin A1 0.02 Orthogroups_2024-Update
Glyma.06G143300 No alias expansin A8 0.03 Orthogroups_2024-Update
Glyma.13G336600 No alias expansin A4 0.04 Orthogroups_2024-Update
HORVU1Hr1G069830.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
HORVU5Hr1G113580.5 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Kfl00164_0230 kfl00164_0230_v1.1 no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
LOC_Os01g60770 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_100868g0010 No alias (at2g40610 : 292.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00025835-RA No alias (at1g26770 : 394.0) Encodes an expansin. Naming... 0.04 Orthogroups_2024-Update
Potri.004G123200 No alias expansin A1 0.03 Orthogroups_2024-Update
Potri.009G031800 No alias expansin A4 0.03 Orthogroups_2024-Update
Potri.019G057500 No alias expansin A8 0.03 Orthogroups_2024-Update
Pp1s191_27V6 No alias alpha expansin xpa5 0.02 Orthogroups_2024-Update
Sobic.001G314600.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.007G166500.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Solyc10g086520 No alias expansin 6 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0007088 regulation of mitotic nuclear division IEP Predicted GO
BP GO:0007346 regulation of mitotic cell cycle IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010564 regulation of cell cycle process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
BP GO:0033044 regulation of chromosome organization IEP Predicted GO
BP GO:0033045 regulation of sister chromatid segregation IEP Predicted GO
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0051783 regulation of nuclear division IEP Predicted GO
BP GO:0051983 regulation of chromosome segregation IEP Predicted GO
BP GO:0090231 regulation of spindle checkpoint IEP Predicted GO
BP GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint IEP Predicted GO
BP GO:1901976 regulation of cell cycle checkpoint IEP Predicted GO
BP GO:1901987 regulation of cell cycle phase transition IEP Predicted GO
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Predicted GO
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
BP GO:1903504 regulation of mitotic spindle checkpoint IEP Predicted GO
BP GO:1905818 regulation of chromosome separation IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 162 239
IPR009009 RlpA-like_DPBB 73 151
No external refs found!