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Description : pectate lyase & EC_4.2 carbon-oxygen lyase
Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.K01484.1 | |
| Cluster | HCAA Clusters: Cluster_312 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_16129 | No alias | putative pectate lyase 18 | 0.03 | Orthogroups_2024-Update | |
| A4A49_24630 | No alias | putative pectate lyase 3 | 0.03 | Orthogroups_2024-Update | |
| A4A49_32326 | No alias | putative pectate lyase 3 | 0.04 | Orthogroups_2024-Update | |
| A4A49_40716 | No alias | putative pectate lyase 16 | 0.04 | Orthogroups_2024-Update | |
| At1g30350 | No alias | Probable pectate lyase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G4] | 0.03 | Orthogroups_2024-Update | |
| Bradi3g08035 | No alias | Pectate lyase family protein | 0.03 | Orthogroups_2024-Update | |
| Brara.B03463.1 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G075970.2 | No alias | pectate lyase & EC_4.2 carbon-oxygen lyase | 0.04 | Orthogroups_2024-Update | |
| MA_10437227g0030 | No alias | (at3g24670 : 413.0) Pectin lyase-like superfamily... | 0.02 | Orthogroups_2024-Update | |
| PSME_00019558-RA | No alias | (at4g13710 : 625.0) Pectin lyase-like superfamily... | 0.02 | Orthogroups_2024-Update | |
| PSME_00019559-RA | No alias | (at4g13710 : 600.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| PSME_00019824-RA | No alias | (at1g67750 : 587.0) Pectate lyase family protein;... | 0.03 | Orthogroups_2024-Update | |
| PSME_00020308-RA | No alias | (at4g13710 : 598.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| PSME_00029499-RA | No alias | (at5g63180 : 517.0) Pectin lyase-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| PSME_00041064-RA | No alias | (at1g67750 : 595.0) Pectate lyase family protein;... | 0.03 | Orthogroups_2024-Update | |
| PSME_00046555-RA | No alias | (at4g24780 : 518.0) Pectin lyase-like superfamily... | 0.02 | Orthogroups_2024-Update | |
| Potri.001G052300 | No alias | Pectin lyase-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Potri.003G175900 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.008G182200 | No alias | Pectate lyase family protein | 0.03 | Orthogroups_2024-Update | |
| Potri.011G093400 | No alias | Pectin lyase-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.015G087800 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s173_162V6 | No alias | pectate lyase | 0.03 | Orthogroups_2024-Update | |
| Pp1s206_50V6 | No alias | pectate lyase | 0.02 | Orthogroups_2024-Update | |
| Pp1s409_2V6 | No alias | pectate lyase | 0.02 | Orthogroups_2024-Update | |
| Pp1s67_160V6 | No alias | pectate lyase | 0.03 | Orthogroups_2024-Update | |
| Solyc03g111690 | No alias | Pectate lyase family protein (AHRD V3.3 *** AT1G67750.1) | 0.03 | Orthogroups_2024-Update | |
| Solyc06g083580 | No alias | Pectate lyase (AHRD V3.3 *** A0A022QXK5_ERYGU) | 0.03 | Orthogroups_2024-Update | |
| Solyc09g061890 | No alias | Pectate lyase (AHRD V3.3 *** M1BAL5_SOLTU) | 0.03 | Orthogroups_2024-Update | |
| Sopen03g019850 | No alias | Pectate lyase | 0.02 | Orthogroups_2024-Update | |
| Sopen05g003050 | No alias | Pectate lyase | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | IEP | Predicted GO |
| BP | GO:0001932 | regulation of protein phosphorylation | IEP | Predicted GO |
| MF | GO:0003855 | 3-dehydroquinate dehydratase activity | IEP | Predicted GO |
| MF | GO:0003993 | acid phosphatase activity | IEP | Predicted GO |
| MF | GO:0004559 | alpha-mannosidase activity | IEP | Predicted GO |
| MF | GO:0004764 | shikimate 3-dehydrogenase (NADP+) activity | IEP | Predicted GO |
| BP | GO:0006013 | mannose metabolic process | IEP | Predicted GO |
| MF | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity | IEP | Predicted GO |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015297 | antiporter activity | IEP | Predicted GO |
| MF | GO:0015923 | mannosidase activity | IEP | Predicted GO |
| MF | GO:0019900 | kinase binding | IEP | Predicted GO |
| MF | GO:0019901 | protein kinase binding | IEP | Predicted GO |
| BP | GO:0042325 | regulation of phosphorylation | IEP | Predicted GO |
| BP | GO:0043549 | regulation of kinase activity | IEP | Predicted GO |
| BP | GO:0045859 | regulation of protein kinase activity | IEP | Predicted GO |
| BP | GO:0051338 | regulation of transferase activity | IEP | Predicted GO |
| BP | GO:0071900 | regulation of protein serine/threonine kinase activity | IEP | Predicted GO |
| BP | GO:1904029 | regulation of cyclin-dependent protein kinase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 141 | 323 |
| No external refs found! |