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  5. HORVU0Hr1G013190.1

HORVU0Hr1G013190.1


Description : histone *(H2A)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU0Hr1G013190.1
Cluster HCAA Clusters: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
73637 No alias gamma histone variant H2AX 0.02 Orthogroups_2024-Update
Bradi2g37327 No alias histone H2A 12 0.03 Orthogroups_2024-Update
HORVU5Hr1G069690.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
MA_924620g0010 No alias (q2hu68|h2a1_medtr : 180.0) Probable histone H2A.1 -... 0.02 Orthogroups_2024-Update
MA_93628g0020 No alias (q2hu68|h2a1_medtr : 174.0) Probable histone H2A.1 -... 0.02 Orthogroups_2024-Update
PSME_00049247-RA No alias (p50567|h2a_chlre : 114.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
Seita.2G343400.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Seita.3G347600.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 5 87
IPR032454 Histone_H2A_C 90 123
No external refs found!