At2g39390

Description : 60S ribosomal protein L35-2 [Source:UniProtKB/Swiss-Prot;Acc:O80626]

Gene families : OG_42_0001364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001364_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At2g39390
Cluster	HCCA clusters: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
438324	No alias	Ribosomal L29 family protein	0.04	Orthogroups_2024-Update
A4A49_28237	No alias	60s ribosomal protein l35-4	0.03	Orthogroups_2024-Update
A4A49_63512	No alias	60s ribosomal protein l35-4	0.03	Orthogroups_2024-Update
Bradi3g43840	No alias	Ribosomal L29 family protein	0.05	Orthogroups_2024-Update
Bradi5g07170	No alias	Ribosomal L29 family protein	0.05	Orthogroups_2024-Update
Brara.A03526.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.C03268.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Brara.E03085.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.J02866.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Cre14.g617900	No alias	Ribosomal L29 family protein	0.08	Orthogroups_2024-Update
GRMZM2G043279	No alias	Ribosomal L29 family protein	0.04	Orthogroups_2024-Update
Glyma.10G291500	No alias	Ribosomal L29 family protein	0.06	Orthogroups_2024-Update
Glyma.13G133900	No alias	Ribosomal L29 family protein	0.04	Orthogroups_2024-Update
Glyma.20G240700	No alias	Ribosomal L29 family protein	0.07	Orthogroups_2024-Update
HORVU2Hr1G068120.2	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Kfl00608_0050	kfl00608_0050_v1.1	(at5g02610 : 177.0) Ribosomal L29 family protein ;...	0.03	Orthogroups_2024-Update
MA_10429159g0020	No alias	(at5g02610 : 210.0) Ribosomal L29 family protein ;...	0.03	Orthogroups_2024-Update
Mp6g05620.1	No alias	component RPL35 of LSU proteome component	0.08	Orthogroups_2024-Update
PSME_00020825-RA	No alias	(at5g02610 : 157.0) Ribosomal L29 family protein ;...	0.04	Orthogroups_2024-Update
Potri.008G048800	No alias	Ribosomal L29 family protein	0.03	Orthogroups_2024-Update
Pp1s133_93V6	No alias	60s ribosomal protein l35	0.03	Orthogroups_2024-Update
Pp1s1_489V6	No alias	60s ribosomal protein l35	0.04	Orthogroups_2024-Update
Seita.7G064700.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Sobic.004G152400.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Sobic.004G152700.1	No alias	component *(uL29) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Solyc04g010240	No alias	60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES)	0.09	Orthogroups_2024-Update
Solyc05g054810	No alias	60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES)	0.07	Orthogroups_2024-Update
evm.model.contig_654.2	No alias	(at5g02610 : 134.0) Ribosomal L29 family protein ;...	0.06	Orthogroups_2024-Update
evm.model.tig00000241.79	No alias	(at3g55170 : 158.0) Ribosomal L29 family protein ;...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Predicted GO
BP	GO:0001510	RNA methylation	IEP	Predicted GO
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0004421	hydroxymethylglutaryl-CoA synthase activity	IEP	Predicted GO
MF	GO:0004665	prephenate dehydrogenase (NADP+) activity	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006570	tyrosine metabolic process	IEP	Predicted GO
BP	GO:0006571	tyrosine biosynthetic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008977	prephenate dehydrogenase (NAD+) activity	IEP	Predicted GO
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016435	rRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
BP	GO:0031167	rRNA methylation	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0036265	RNA (guanine-N7)-methylation	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	IEP	Predicted GO
BP	GO:0070475	rRNA base methylation	IEP	Predicted GO
BP	GO:0070476	rRNA (guanine-N7)-methylation	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
MF	GO:0097747	RNA polymerase activity	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	8	64

External Links

No external refs found!

At2g39390

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation