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Description : Pentatricopeptide repeat-containing protein At2g39620 [Source:UniProtKB/Swiss-Prot;Acc:O80647]
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Arabidopsis release: At2g39620 | |
| Cluster | HCCA clusters: Cluster_59 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 103939 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| A4A49_23672 | No alias | pentatricopeptide repeat-containing protein, mitochondrial | 0.04 | Orthogroups_2024-Update | |
| At2g46050 | No alias | Pentatricopeptide repeat-containing protein At2g46050,... | 0.02 | Orthogroups_2024-Update | |
| At3g01580 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | Orthogroups_2024-Update | |
| At3g49170 | No alias | Pentatricopeptide repeat-containing protein At3g49170,... | 0.04 | Orthogroups_2024-Update | |
| Bradi1g14160 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi1g72290 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi2g04723 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi2g09441 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi3g40131 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi3g43210 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi4g20810 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi4g22520 | No alias | mitochondrial editing factor 22 | 0.03 | Orthogroups_2024-Update | |
| Bradi4g33270 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi4g38420 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.F03378.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Glyma.04G078800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.11G006200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G221300 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU4Hr1G032070.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU4Hr1G064880.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G047290.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| LOC_Os09g24640 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_183278g0010 | No alias | (at3g12770 : 619.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
| PSME_00001133-RA | No alias | (at2g03880 : 550.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00001719-RA | No alias | (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00003567-RA | No alias | (at4g13650 : 593.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00056153-RA | No alias | (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| Potri.001G108500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.003G191000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Seita.1G205700.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.1G290500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.3G069000.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Seita.4G225800.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.5G124400.1 | No alias | RNA editing factor *(OTP81) | 0.03 | Orthogroups_2024-Update | |
| Seita.8G017200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G030100.1 | No alias | RNA editing factor *(CWM1) | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003964 | RNA-directed DNA polymerase activity | IEP | Predicted GO |
| CC | GO:0016020 | membrane | IEP | Predicted GO |
| MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 438 | 462 |
| IPR002885 | Pentatricopeptide_repeat | 267 | 294 |
| IPR002885 | Pentatricopeptide_repeat | 139 | 165 |
| IPR002885 | Pentatricopeptide_repeat | 167 | 195 |
| IPR002885 | Pentatricopeptide_repeat | 744 | 769 |
| IPR002885 | Pentatricopeptide_repeat | 339 | 364 |
| IPR002885 | Pentatricopeptide_repeat | 643 | 666 |
| IPR002885 | Pentatricopeptide_repeat | 465 | 512 |
| IPR002885 | Pentatricopeptide_repeat | 670 | 715 |
| IPR002885 | Pentatricopeptide_repeat | 567 | 613 |
| IPR002885 | Pentatricopeptide_repeat | 62 | 111 |
| IPR002885 | Pentatricopeptide_repeat | 365 | 412 |
| No external refs found! |