HORVU1Hr1G000290.3

Description : component *(SNL) of histone deacetylase machineries

Gene families : OG_42_0000363 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000363_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Hordeum vulgare: HORVU1Hr1G000290.3
Cluster	HCAA Clusters: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
A4A49_20666	No alias	paired amphipathic helix protein sin3-like 3	0.02	Orthogroups_2024-Update
At1g24190	No alias	SIN3-like 3 [Source:TAIR;Acc:AT1G24190]	0.02	Orthogroups_2024-Update
At1g59890	No alias	SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]	0.03	Orthogroups_2024-Update
Bradi2g00860	No alias	SIN3-like 4	0.06	Orthogroups_2024-Update
Bradi2g40052	No alias	SIN3-like 4	0.03	Orthogroups_2024-Update
Brara.G02936.1	No alias	component *(SNL) of histone deacetylase machineries	0.02	Orthogroups_2024-Update
GRMZM2G334457	No alias	SIN3-like 4	0.03	Orthogroups_2024-Update
Glyma.02G026700	No alias	SIN3-like 4	0.04	Orthogroups_2024-Update
Glyma.08G292900	No alias	SIN3-like 3	0.02	Orthogroups_2024-Update
Kfl00311_0140	kfl00311_0140_v1.1	(at5g15020 : 616.0) Encodes a homolog of the...	0.01	Orthogroups_2024-Update
PSME_00010905-RA	No alias	(at5g15020 : 593.0) Encodes a homolog of the...	0.02	Orthogroups_2024-Update
Seita.5G073400.1	No alias	component *(SNL) of histone deacetylase machineries	0.04	Orthogroups_2024-Update
Sobic.003G101400.1	No alias	component *(SNL) of histone deacetylase machineries	0.04	Orthogroups_2024-Update
Sopen05g002490	No alias	Paired amphipathic helix repeat	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003729	mRNA binding	IEP	Predicted GO
MF	GO:0004806	triglyceride lipase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005685	U1 snRNP	IEP	Predicted GO
BP	GO:0006376	mRNA splice site selection	IEP	Predicted GO
BP	GO:0007155	cell adhesion	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
BP	GO:0009116	nucleoside metabolic process	IEP	Predicted GO
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0009314	response to radiation	IEP	Predicted GO
BP	GO:0009416	response to light stimulus	IEP	Predicted GO
BP	GO:0009581	detection of external stimulus	IEP	Predicted GO
BP	GO:0009582	detection of abiotic stimulus	IEP	Predicted GO
BP	GO:0009583	detection of light stimulus	IEP	Predicted GO
BP	GO:0009584	detection of visible light	IEP	Predicted GO
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO
BP	GO:0022610	biological adhesion	IEP	Predicted GO
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predicted GO
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predicted GO
CC	GO:0031011	Ino80 complex	IEP	Predicted GO
CC	GO:0033202	DNA helicase complex	IEP	Predicted GO
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO
CC	GO:0044428	nuclear part	IEP	Predicted GO
CC	GO:0044454	nuclear chromosome part	IEP	Predicted GO
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0051606	detection of stimulus	IEP	Predicted GO
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Predicted GO
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predicted GO
CC	GO:0097346	INO80-type complex	IEP	Predicted GO
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predicted GO
CC	GO:0120114	Sm-like protein family complex	IEP	Predicted GO
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901657	glycosyl compound metabolic process	IEP	Predicted GO
CC	GO:1904949	ATPase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003822	PAH	313	357
IPR003822	PAH	37	80
IPR003822	PAH	120	164
IPR013194	HDAC_interact_dom	450	542
IPR031693	Sin3_C	1040	1288

External Links

No external refs found!

HORVU1Hr1G000290.3

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation