1. Home
  2. Species
  3. Hordeum vulgare
  4. Sequence
  5. HORVU1Hr1G001920.3

HORVU1Hr1G001920.3


Description : A-class RAB GTPase


Gene families : OG_42_0000131 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000131_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU1Hr1G001920.3
Cluster HCAA Clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
A4A49_30348 No alias ras-related protein rab11d 0.03 Orthogroups_2024-Update
Bradi2g46060 No alias RAB GTPase homolog A1F 0.05 Orthogroups_2024-Update
Brara.K00444.1 No alias A-class RAB GTPase 0.04 Orthogroups_2024-Update
Seita.2G282900.1 No alias A-class RAB GTPase 0.02 Orthogroups_2024-Update
Sobic.002G271600.1 No alias A-class RAB GTPase 0.02 Orthogroups_2024-Update
Solyc01g086850 No alias Ras-related protein RGP1 (AHRD V3.3 *** RLGP1_ORYSJ) 0.03 Orthogroups_2024-Update
evm.model.tig00020961.97 No alias (q39572|yptc6_chlre : 290.0) Ras-related protein YPTC6 -... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA 16Dec
MF GO:0005525 GTP binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001806 Small_GTPase 21 180
No external refs found!