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  5. HORVU1Hr1G004200.1

HORVU1Hr1G004200.1


Description : Unknown function


Gene families : OG_42_0001049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU1Hr1G004200.1
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
At2g29190 No alias Pumilio homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW06] 0.04 Orthogroups_2024-Update
Bradi2g39240 No alias pumilio 1 0.02 Orthogroups_2024-Update
Glyma.11G136700 No alias pumilio 2 0.03 Orthogroups_2024-Update
Glyma.12G060400 No alias pumilio 2 0.03 Orthogroups_2024-Update
Glyma.15G035900 No alias pumilio 2 0.03 Orthogroups_2024-Update
LOC_Os01g74030 No alias pumilio-family RNA binding protein, putative, expressed 0.06 Orthogroups_2024-Update
Solyc04g011580 No alias Pumilio, putative (AHRD V3.3 *** B9SDY2_RICCO) 0.04 Orthogroups_2024-Update
evm.model.contig_2045.3 No alias (at3g20250 : 321.0) Encodes a member of the Arabidopsis... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012940 NABP 326 543
IPR012940 NABP 222 354
IPR001313 Pumilio_RNA-bd_rpt 620 653
IPR001313 Pumilio_RNA-bd_rpt 730 763
IPR001313 Pumilio_RNA-bd_rpt 765 798
IPR001313 Pumilio_RNA-bd_rpt 663 686
IPR001313 Pumilio_RNA-bd_rpt 548 582
IPR001313 Pumilio_RNA-bd_rpt 585 617
IPR001313 Pumilio_RNA-bd_rpt 692 727
IPR001313 Pumilio_RNA-bd_rpt 811 838
No external refs found!