1. Home
  2. Species
  3. Hordeum vulgare
  4. Sequence
  5. HORVU1Hr1G005870.1

HORVU1Hr1G005870.1


Description : histone *(H2A)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU1Hr1G005870.1
Cluster HCAA Clusters: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
At1g54690 No alias Probable histone H2AXb [Source:UniProtKB/Swiss-Prot;Acc:Q9S9K7] 0.02 Orthogroups_2024-Update
At5g59870 No alias Probable histone H2A.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJE8] 0.03 Orthogroups_2024-Update
Bradi1g25390 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g264950 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g265350 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g268300 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g274200 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre12.g506250 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre13.g570100 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g708550 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre17.g709200 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.02 Orthogroups_2024-Update
GRMZM2G151726 No alias histone H2A 2 0.03 Orthogroups_2024-Update
Glyma.19G151400 No alias gamma histone variant H2AX 0.03 Orthogroups_2024-Update
Glyma.19G234100 No alias histone H2A 7 0.03 Orthogroups_2024-Update
HORVU5Hr1G026650.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G021160.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
PSME_00008207-RA No alias (p02276|h2a2_wheat : 135.0) Histone H2A.2.1 - Triticum... 0.02 Orthogroups_2024-Update
PSME_00015855-RA No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.02 Orthogroups_2024-Update
Pp1s72_86V6 No alias histone h2a 0.02 Orthogroups_2024-Update
Seita.5G370700.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Solyc10g006560 No alias Histone H2A (AHRD V3.3 *** A0A0V0H7M3_SOLCH) 0.03 Orthogroups_2024-Update
Sopen11g030890 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
evm.model.contig_533.4 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 124 156
IPR007125 Histone_H2A/H2B/H3 30 120
No external refs found!