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  5. HORVU1Hr1G013600.3

HORVU1Hr1G013600.3


Description : E3 SUMO ubiquitin ligase *(SIZ1)


Gene families : OG_42_0001670 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001670_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU1Hr1G013600.3
Cluster HCAA Clusters: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Bradi2g38030 No alias DNA-binding protein with MIZ/SP-RING zinc finger,... 0.04 Orthogroups_2024-Update
Glyma.12G071300 No alias DNA-binding protein with MIZ/SP-RING zinc finger,... 0.03 Orthogroups_2024-Update
Glyma.13G328100 No alias DNA-binding protein with MIZ/SP-RING zinc finger,... 0.03 Orthogroups_2024-Update
Kfl00170_0260 kfl00170_0260_v1.1 no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_10436942g0020 No alias (at5g60410 : 372.0) Encodes a plant small... 0.04 Orthogroups_2024-Update
Potri.009G015000 No alias DNA-binding protein with MIZ/SP-RING zinc finger,... 0.03 Orthogroups_2024-Update
Sobic.008G002300.1 No alias E3 SUMO ubiquitin ligase *(SIZ1) 0.04 Orthogroups_2024-Update
Sobic.009G026500.1 No alias E3 SUMO ubiquitin ligase *(SIZ1) 0.03 Orthogroups_2024-Update
evm.model.contig_2055.5 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003034 SAP_dom 109 137
IPR019787 Znf_PHD-finger 211 264
IPR004181 Znf_MIZ 457 505
No external refs found!